HsaINT0159400 @ hg38
Intron Retention
Gene
ENSG00000179954 | SSC5D
Description
scavenger receptor cysteine rich family member with 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
Coordinates
chr19:55490772-55493912:+
Coord C1 exon
chr19:55490772-55491080
Coord A exon
chr19:55491081-55493594
Coord C2 exon
chr19:55493595-55493912
Length
2514 bp
Sequences
Splice sites
5' ss Seq
CCGGTACGT
5' ss Score
10.49
3' ss Seq
CTCCCTCTCCCACTATCCAGGCC
3' ss Score
9.07
Exon sequences
Seq C1 exon
AGCGGCTGCGCCTGGTCTCTGGCCCCCACAGGTGCGCCGGACGCCTGGAGGTCTGGCACGGCGGGCGCTGGGGCACCGTATGTGACGATGGCTGGGACCTGCGCGACGCTGCTGTAGCCTGCCGGGAACTGGGCTGTGGGGGGGCGCTGGCTGCCCCCGGCGGTGCCAGATTCGGGCCTGGTGCAGGGCCCGTGTGGATGGACGATGTGGGGTGTGGAGGAGGAGAACAGGCCCTCCGAGACTGCCCCCGAAGCCCCTGGGGCCGGAGCAACTGTGACCACAGCGAGGATGCGGGGCTGGTCTGCACCG
Seq A exon
GTACGTCGGGCTGGGGCCTGGCCCCCTCCTGTCTTCCTCAGACCCCAGCTCCCTCTTGCCCCTCCAGGAAGCTGCAGCGGGCCTGCTCCCAGCTCTGCCTCCTGCCCGCCTGCTCTCTGCATGCCCAGCGCCCACTCACCACGCTCTCCAGCCCCTCCTTCCACAGCTCCTGCCGTTCTCCTTGCCAGGAATGGGAGGAGCAGGCTTGAGGCTTGGGCTAGTGCTCAGCCCTGTCCCGGGGCCTAGGCCAGTGACCGTTTGTTTAAGCCTCAGTTTTCCTGAAGGAGCGATGGAGCTAAGAATGCCTGCCTCAGGCTTGAGCCAAGTCCTGGAACGCAAGAAGCCCTGCCTGCCCTCTGCCACCGGGCTGGCCATGGCAGGGGACCGTCTCGGAGACCTCTTGTCTCTGTGGCCAACCTCTGCTCCTTCCCCATCCTCAAGGGAGCTGGTGGGAAGGAGGGAGGGAGGGCGGTGACTTGGGGGCATGGAGGGAGACTGAGGCAGGGTGGGGACACCCACGGGTGAGCCTCCATCTCCCCTCATTCACGCCCCCTCAGCGCGGGGTCTCCTCCCCTCATGTCTCCCAGGGGGTCCCTCCCCTCTCCTGTACCCCTTGGACCTGGGATAGAACCCAGCAAACAGCGGTTGGGGGGTGTTAGGTGAGAGCTCAGGGGCTCCCTCCCTCCTTCTCTCCTTCCTTCCTTCCTCCCTCTTTCCCTTTCTCTTTCCTTTCTTTCCTTCCACAAATCTTTACACACCACCACGGCAGGCCCCACCCTGCTGGACTGCCCGATCCATTGACTGTAGGAGGCCGGCAGGCAGAGGGCACCCACCTGGCATTTCATCAGCGTTGGGGTGGGGACAGTACACGGGCTGCAGGCAAAGCTGGGTGCCTGCCCAGGATGGGTAGGAAATGCTGACATCAGTGGGTATCCAGGGGGGAGAGAAGAGAGAAAGAGGCTGACCCTAGTCTCTGCTGTATGCTGGGCCCTGCGCTGTGCACGTTACCTGGGGCCGCTCTGAGCCTCCCGCAGCCCGGACGGGGTGGATCCTCATCCCTCTCTTCACAGATGTGGGGCCGAGGCTCAGAGAGGTGACGTAAATGGCCCAAGACCCAGGTGCCTAGCAAGCTCCAGCCCCAGCCGCTGACCCCTCTGGGTCTGTATAGACCCACGCTCCATGCCTGTCCCACTGCACAGTCGGCCATAGGGACGTGGTGGGGACACGGAGGTCAGAGTGGGAGTGAGCAGCAGAGAAGGCTTGTATGGGGTGGGGGTGGTGCCTTCGTGTGCCTAGTGTACAAGCTGTGGGGGAAGAAGTGGGACCTTCGGAGCAGAGTTCATTGGAGGGAAGTTGAGGCTCTGGAGAGGAGAGGGTGAAGGTGCCAAGAAAGGAAACAAATGAACTAAGGCGCCCGGTGAAGCTGGGAGCTTCGCCAGCATCTGATTTAATTCTCATGGCAACCCCGGGAGGGAGACGCTCCCCTCCCCTGTCTGCAGATGAGGAAAAGCAGACAGGTGTGTTAGACTCCTCCCTAGTTCTGTGCTCTTCTCTAGAACAGTGATTGGGGGCAATTCTGCACCTGCCTCGTTGGGGGACAGAGAGAGGGACTCCAGAGTCCTCCAATGATGAGTCAACTCTTACCCCAACAGAAATGTACCCGAAGAGCCAGGCATGGTTACAGGCTAACACCTGTAGCCCACGTGCTTTGGGAGGATTTCTTGAGGCCAGGAGTTCAAGACCAGTCTGGGCAACATAGTGAGACCCTTTCCCTACAAAATATAAAATAAAAAAAAAATAGCAGGGCATGGTGGCGCATGCCTGTAGTCCCAGCTACTTGGGAGAGGCTGAGGCGGGGAGGATTCCTTGGGTCCAGGAGGTCGAGACTGCAGTGAGCCAAGATTGCACCATTGCACTCCAGCCTGGGTGACATAGTGAGATCCCCTCCCCCCAAAAATAAAAAAATGAAATGTACCCTATGTATCCTAAGGCCAGCGAGAGGTTAATATCTAGACTAGTGGCTCTCAGCTGGCAAGGGAGTGAGGGCTTTCTCATCCCCTTCCTCCCCAAAGGACATCAGGCAATGTCTGGAGACGTTTTTGGTTGTCGCAGCTAGGGGGAGGGGTTGCCACTGGCATGTGGTGGGTAGAGGATGCAGTGCAGGACAGTTGCCACGATAAAGGAGGATGCCCAATGCCAGTGGTGCTGAGACTTGGAAATCCGGCTCTCTAGGATCCGAGGGGCCAGGCATGGGAGGTGGATCCAGGGGACCAGAGCCAGAGCTCCCAGCGTCCCCAGCCCCCACCGCCCCAAGGCAAGGGATATGGGGGATGCGCCAGAGTTGGACTCCGGGCCAGTGACTTCCTGTCTTGGAACCTTTTCCTCATTTGGATAGTGAAGATGGAATATTTGCTTCCCAGAGTCATCTTGGGGTTGCAGCCTGCCTGAGCATAGCTTAGTCCCCGCTCATCCACCCTCGTTTCCTGGCCCTGTGCTCCCTCTCCCACTATCCAG
Seq C2 exon
GCCCAGCACCTCGGCTGCGCCTGGCCGATGGCCCCCACGGGTGCGCCGGCCGCCTGGAGGTCTGGCACGGGGGTCGCTGGGGGTCGGTGTGTGACGACGCCTGGGACCTGCGAGACGCCGCTGTGGCCTGCCGAGAGCTGGGCTGCGGAGGGGCGCTGGCCGCCCCCGGGGGCGCCTTCTTTGGGGAGGGGTCTGGACCCATCATCCTGGACGACCTTCGGTGTCGGGGAAACGAGACGGCCTTACGATTCTGCCCAGCTCGGCCCTGGGGCCAGCATGACTGTCACCACCGCGAGGACGCCGGGGCCGTGTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179954:ENST00000389623:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
NA
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains