GgaINT1024406 @ galGal4
Intron Retention
Gene
ENSGALG00000027253 | SBK3
Description
SH3 domain binding kinase family, member 3 [Source:HGNC Symbol;Acc:HGNC:44121]
Coordinates
chrLGE64:691836-693269:-
Coord C1 exon
chrLGE64:693238-693269
Coord A exon
chrLGE64:692148-693237
Coord C2 exon
chrLGE64:691836-692147
Length
1090 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TCTCCTGCTCTCCCCTGCAGTTC
3' ss Score
11.66
Exon sequences
Seq C1 exon
GGGGGGGCTGCGTAGCCTCGGACTGTGCCTGG
Seq A exon
GTGAGGACATGGGGGGTGCAGAGCTGGGGGAAATAGAAGGCATAGAGATGGGAGGCATGTGAGGGGCACAGAGGTGGAGGCATGTGGGGAGACAGAACTGGGGTGCATGGTGGGCAGAGCGGGAGGAAAAGGGGGGAAACAGAGCTGGGGACACATGGAGACAGAACTGGGGGAAAACATTTTGTGTTTTATGTCACTGGGTTGGGCAGTCCTGAGGGTCTTGGGTGGTCTGTGGGTGTCTCTGTCTCTTTCCAACTCCTCCTTCTTTCCCCCTCAGCTTTGTGCTGTGGTGCCGTGATTGGATCTGGTATGTTGGGTGTCATTGGATGTCAGTGGGGTTCACTGGGTGCCACTTGGGTGTTACTTGAGATCATTGAGTGTCCTGCATGTCAGTAGGGGTCACTGGGCATCGCTGGGGGTCAGTAGGTGTCCTAGGATGTCCCACAGATACCATTTGGGTGCCCTGGAGCCAGCAGTTGCTGGATGGGGCAGGCACTGCGGCATGGGCAACAGGTAGGATGGTTTGAACTGGACAGACTGGAGCTGTACTGGACAACGTACTGGGCAGACTAGAACTGTACAGGACAGACAAGCTATACTGGGACAAGGCTGGGTCACTGTACTGGTGCTGTACTTGGCAGACTGAGACTGAATTGGACAGACTGGGGCCTAGATGGGAAGACTGGGGCTGGTGCTGGTGCTGAGCTGGGGCCATGCTAGGCAGATTGGGAGTGAGCTTAAACTGGGGCTGGGCTGTGGCTGTGGTGAGCATAGTGGGAGCATGGTGGGAATACTGAGACTGAGCAAGGCAAACTAGGACTGAACTAGGCAGGCCTGGACTGAGCTGGGCAGACTGGGGTTGTGCTGGGACCGTCCTGAACAGACTGGGGCTGAACTGGGCGGAGTGTGGCTGAACTGGGCATGCTGGGGCAGGGCTGGGGCTTTGCTATGACTGTGCTGAGTGGACTGGGTGCTGTGCTAAGCAAACTGGTGCTGCGCTGGGCAGACTGGTGCTGTGCTGGTCAGGCTGGTGCAGCACTGGGAAGGCCATGCAGCTCCCCATGCTTCACTCTCCTGCTCTCCCCTGCAG
Seq C2 exon
TTCCTGCCCGGCTCTCCGGCAGCCACTCCCCATGCCAGGGCCGCGTGGAGCTGCTGCAGGACGGCACCTGGGCCTCGGTCTGCGCCATGGGCTGGGACCTTGCAGCTGCCCACGTCCTGTGTCGCCAGCTGGGCTGCGGGCGCCCCCGAGCCGTCCCAGTGCCCTGCAGCCCTCCCATGGCTGAGGGGAACGTGGTGGGTCTGCGTCAGGTGCTGTGTGCAGGGCAGGAGCTGGACTTGGAGCACTGCAAGCTGCAGCCCGGTGACGCTGCATCTTGTCCCTCCAACCATGTGGCTGCTGTCAACTGCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027253:ENSGALT00000045707:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAGCCTCGGACTGTGCC
R:
CCTCGCAGTTGACAGCAGC
Band lengths:
334-1424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]