GgaINT0112120 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:80922958-80924473:-
Coord C1 exon
chr1:80924159-80924473
Coord A exon
chr1:80923273-80924158
Coord C2 exon
chr1:80922958-80923272
Length
886 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
TTATTATTATTATTCTGCAGACA
3' ss Score
9.25
Exon sequences
Seq C1 exon
AGTTCCTGTCTCTGAGGCTGGCGAATGGCAGTGGCTGTGCTGGACGGCTAGAAGTTTTCTACAATGGGACATGGGGGAGCATTTGCTCCAATCGTATGTCTCAACTCACTGCAGTAACTGTATGCAAACACTTGAACTGTGGAGACGGTGGGGAAATTGAAAGAGATTTCAAATATGGCAGAGGTTCTGGGCCCACGTGGCTGGATCACATTGAGTGCGCTGAGCAACACAGCTCTCTCTGGCAATGTCAGTCAGACCCCTGGGATCCTCAGTCATGTGATACCCGAGCAGAAGAGACCCATATTTCTTGCTCTG
Seq A exon
GTAAATACAAATGCACCCGCGCGGTACCTCCCAAACACACATACATCTGCACATGCATACATGGACAATGCAGTGCTTACCTCATGTTTATTTGTTTCCAGTTTATATTACTTTCAGTTTCATGAAACTTGCGCAAACGTTTTGTCTACATCTGCTGAAAATGAGTAAATTAAAATGCTATCAGTGTTAAAATCCAAGGGAAGCCCCTGACAGGATGCTGCCATTGCTTATCTGTGCATTAAAAATCTGTGAAATGCAATTAGTCTGTGAGATTTCAGCTAAGATGAGACTATTCAAGAAGACTAAGGACATATATGTATTTCTATATGTATGGAGGCAAAGCAATGCTTGTATACATCTAAATACATATGCATGCACGTAACCACGTGCAAGTATATGTTAGTTCAGTTCTGAATTATCATTTCTGGTGCCTGCTGTTAGGACAGTATTTCGTATCTGTGGGTTCTCACTGAAATGTAAATAATTTTTAGATCACATTCAGAAAGGCACTTCAAGAGAAAAGAAAGCAAGGTCATCAGACAGTTTCAAGAAGATTTTTTAATATACAATAATAGCCAAACACTACTAAACACCAACTACTACATCTACTAAATAGGTTACAAATTTATTATAGGAAAAATGCACTTGCTGATTATTGCTCAGGTAGTTTATACTCCTTCGCTCTTTCCAGAGAATAATCTAGTTATTTAACTCAGTATTTAATTTCTGCAGGAAGAAAAGGAACGGTGACTCCAGCCACATTTACTGAGTGTCCAAACTCTTCAAGTTGCTCAGGTACTTCCACCCCTTTGTTATTCCTTATTAGTCACTATGGACCTTACTGCTATTCAGGCAATACAGATTTTTTATTATTATTATTCTGCAG
Seq C2 exon
ACAGGGAGAAGTTACGTGTTGTAGGAGGAGAGGATGCGTGCTCAGGAAGAGTGGAGATTTGGAATCAGGGTTCCTGGGGAACAATCTGTGATGATTCCTGGGATCTGGCAGATGCTAATGTTGTATGCAGGCAACTGGGCTGTGGTTCTGCTGTGTCTGCTCTGAGTGAAGCTGCCTTTGGGGAAGGGACAGGTCCCATCTGGTTGGAGAAGGTCCACTGTAAAGGAACAGAACTGTCACTTTGGGACTGTCCTTCCAAGCCCTTGTTTGGTAAAAACTGTAATCACAAGGAGGATGCTGCCGTGGATTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014720:ENSGALT00000023738:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAACTGTGGAGACGGTGG
R:
CACTCAGAGCAGACACAGCAG
Band lengths:
353-1239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]