GgaINT0112121 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:80922203-80923272:-
Coord C1 exon
chr1:80922958-80923272
Coord A exon
chr1:80922341-80922957
Coord C2 exon
chr1:80922203-80922340
Length
617 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
ACCTCTTTGTTCCCATTTAGCTT
3' ss Score
9.66
Exon sequences
Seq C1 exon
ACAGGGAGAAGTTACGTGTTGTAGGAGGAGAGGATGCGTGCTCAGGAAGAGTGGAGATTTGGAATCAGGGTTCCTGGGGAACAATCTGTGATGATTCCTGGGATCTGGCAGATGCTAATGTTGTATGCAGGCAACTGGGCTGTGGTTCTGCTGTGTCTGCTCTGAGTGAAGCTGCCTTTGGGGAAGGGACAGGTCCCATCTGGTTGGAGAAGGTCCACTGTAAAGGAACAGAACTGTCACTTTGGGACTGTCCTTCCAAGCCCTTGTTTGGTAAAAACTGTAATCACAAGGAGGATGCTGCCGTGGATTGCTCAG
Seq A exon
GTTAGTAAAATGGTCCTTTGGTTCATCACACAAACTGGGGAGGAAGGTGGATAGAGGAATATTATGCCATCTGTCCATCCCAGTGATTAGCCTTTTCATAATTCGGACTGAAGGAACCTCACAAATGATATGAATATATTCTTACTACTTTTCAGTTACCTCTTCCTTAATCTGGACTCACGTTCATTTTGTAGGTGTGACAGAAACAACAACATCTTCCACCAGAGCAGGTAAAACATTCCTTCTTCACCCTTTCTTCCTCTCATCAAATTAGGAACTTCTATTGCCACTGATACTGCATAACAGGTAAATCAGAGGTATATCAACCTGCTTTAGCAGGGGGGTTGGACTCAATGATCTCTTGAGGTCCCTTCCAACCCCTGCAGTTCTGTAATTCTGTGATATTCCAGCTCATCAGAAGGCATCTCCCACAGCCTTTTGTAAAGGAGAGCTGAGTGGCACTATTTCTAGCTGCTGAATTCTTTTTCCTTGAGCAGAAATTATGCAGCAGGCGACCTACCTCACTCTGCTACCATGAGCACACGAGGAGGCTTCAGAGGAGCAGCCTTTGGGCTACTGGGTCCTTCTCTTTGTATTACCTCTTTGTTCCCATTTAG
Seq C2 exon
CTTCACCCCGCCGCTCAGTGACAAACAACAAGAGAGTTTCAGTGCCCGTCATCCTCTGCATCATCCTGGGGGCCCTTCTCTGCCTGGTTCTTGCCATTCTCGCTGGACTGATCCAAAGAGCCAGGGCACAGCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014720:ENSGALT00000023738:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGGAGGAGAGGATGCGTG
R:
GGATGACGGGCACTGAAACTC
Band lengths:
350-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]