GgaINT0112121 @ galGal4
Intron Retention
Gene
ENSGALG00000014720 | CD163L1
Description
CD163 molecule-like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr1:77260395-77260955:-
Coord C1 exon
chr1:77260920-77260955
Coord A exon
chr1:77260533-77260919
Coord C2 exon
chr1:77260395-77260532
Length
387 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
ACCTCTTTGTTCCCATTTAGCTT
3' ss Score
9.66
Exon sequences
Seq C1 exon
GTGTGACAGAAACAACAACATCTTCCACCAGAGCAG
Seq A exon
GTAAAACATTCCTTCTTCACCCTTTCTTCCTCTCATCAAATTAGGAACTTCTATTGCCACTGATACTGCATAACAGGTAAATCAGAGGTATATCAACCTGCTTTAGCAGGGGGGTTGGACTCAATGATCTCTTGAGGTCCCTTCCAACCCCTGCAGTTCTGTAATTCTGTGATATTCCAGCTCATCAGAAGGCATCTCCCACAGCCTTTTGTAAAGGAGAGCTGAGTGGCACTATTTCTAGCTGCTGAATTCTTTTTCCTTGAGCAGAAATTATGCAGCAGGCGACCTACCTCACTCTGCTACCATGAGCACACGAGGAGGCTTCAGAGGAGCAGCCTTTGGGCTACTGGGTCCTTCTCTTTGTATTACCTCTTTGTTCCCATTTAG
Seq C2 exon
CTTCACCCCGCCGCTCAGTGACAAACAACAAGAGAGTTTCAGTGCCCGTCATCCTCTGCATCATCCTGGGGGCCCTTCTCTGCCTGGTTCTTGCCATTCTCGCTGGACTGATCCAAAGAGCCAGGGCACAGCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014720:ENSGALT00000023738:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]