GgaINT0112574 @ galGal4
Intron Retention
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75800728-75801944:-
Coord C1 exon
chr1:75801924-75801944
Coord A exon
chr1:75800897-75801923
Coord C2 exon
chr1:75800728-75800896
Length
1027 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTATATTTTTTCCCCTCAGGAT
3' ss Score
11.22
Exon sequences
Seq C1 exon
TACCCTTTGATTGCAGTTCAG
Seq A exon
GTAAGAGATTTTTCTCTTTCAAATATATCACACTTACAAAAATGAAATCTAGAGCACATATGTTTACATTGGTTTGCACATGTCTATACACAGCCAAATCTTACGCCTAAGTACACTGGCAAAAATTAACAGAAACTCCATAAATTTTCAGGATACTTTCAAGCAAACTTTACTAAGATGGAAAACAAATCTAATTTCATCTCAGCAGACTTAAAAGTCAAACTGTTCTTGTGACTGACTTTGACCCTACTCTACTCCCTTCAGTTTGTTCAACTTGTTTGGAAGTAAATCTTTTCATAACTCAAACCTCTTGAAAATTATGAACAAGTATAGGCAGTGGATAAAATTAGTAGCTGTTGGCACTGCCATGGCTTTTTGCAGTGGTTTCTAAGTAGCAAACATAGCCCACATCTAGATAATATTTCTGAAAGATTTTGTTATAACTTGATGTCACATGACATCCTTTTGTCTACATTGAATCATAAATATTTGGAGCTTCACAGGTTGTTTTTCTTTTTTTCTTTTTTCTCTTTTTTTGTTGTTTGTTTGTTTCAGTCTCTAGTTTAAAGAGTTCAAGGAAATGTGCTGAATGAGTACTCTTTAACCTAGCATAAAATATACTTGGAGGAAAATGACACCTCACTGCAGAAGAGATGTTTTCTTCCTTCTTCTGGCAGTTGAAAAAAAAAGATAGGCTGAAGGGAAAGTATAAAGTATGGATTTTCTCTCCTTCAGCATGAAGCCAGAAAATATATGCTAAGGAGCAGAGAAGAAAAGTATAGTGCAACTTTCTCTCATCATTGAGGCTAATAAATAGACACAACAAAGGAGAGTTAAATATGAGATCAACAGATGAGAATCTAGCAACATTGATAATAAGTATTAAACATAATGTATTCACATTAAACAACTTCCTCAGTGAGTAAAAGGAACTTTACCTATTTGCTTCATTGTTTCTGGTTTTGTTAGCTAATTGCAGAAGATTTCAAATGCAAACAAACTGTGAATCTATATTTTTTCCCCTCAG
Seq C2 exon
GATCCACAGAACAACAGGATCTTTCAGTGGCAAAATGTGACGTCAGAGATTAACATTGTCCAGATTGAATTCCCACTAACTGAAGAGCCTATACTAGGAAACTACAAAATTATTGTAACAAAGAAATCAGGAGAGAGAACAAGTCATTCATTCCTTGTGGAGGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100)
A:
NA
C2:
PF0183514=A2M_N=PD(55.3=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]