GgaINT0112578 @ galGal3
Intron Retention
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79439643-79440076:-
Coord C1 exon
chr1:79439962-79440076
Coord A exon
chr1:79439753-79439961
Coord C2 exon
chr1:79439643-79439752
Length
209 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
ACTCTGGGCATTTCTTACAGGTC
3' ss Score
8.98
Exon sequences
Seq C1 exon
CTGGATACAGATGGCTGCCTCTCCCACATTCTCAGCTCCAAGGTCTTTGAACTAAATCGCATTGGTTACAAGAGGAATCTTGATGTGAAAGCCATTGTCACAGAGAAAGGAACAG
Seq A exon
GTAATTCCTTCTGCGCAGTCAGAAACAACAATAGTGGTATGATCAAAAAAGAAAGTAAGGAGTATTCAACCCCTGTTTCTGAGCACAAGGATGTCTTTTTAAAGAAGAATGTCCATTTTTATAAGCATATTTCTATGCAAATGTTAAGTCTGATGAAGATACATGCAAGATAAAGTGTATTTTCCTTTGACTCTGGGCATTTCTTACAG
Seq C2 exon
GTCTGCAACTTACAGCTACTCAGTCTATTTCCATAACTCAAGTGATGAGCAGTTTACAGTTTGAGAATGTGGATCATCACTACAGAAGAGGAATTCCTTATTTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACAGATGGCTGCCTCT
R:
AGGAATTCCTCTTCTGTAGTGATGA
Band lengths:
212-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]