GgaINT0112578 @ galGal4
Intron Retention
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75797159-75797592:-
Coord C1 exon
chr1:75797478-75797592
Coord A exon
chr1:75797269-75797477
Coord C2 exon
chr1:75797159-75797268
Length
209 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
ACTCTGGGCATTTCTTACAGGTC
3' ss Score
8.98
Exon sequences
Seq C1 exon
CTGGATACAGATGGCTGCCTCTCCCACATTCTCAGCTCCAAGGTCTTTGAACTAAATCGCATTGGTTACAAGAGGAATCTTGATGTGAAAGCCATTGTCACAGAGAAAGGAACAG
Seq A exon
GTAATTCCTTCTGCGCAGTCAGAAACAACAATAGTGGTATGATCAAAAAAGAAAGTAAGGAGTATTCAACCCCTGTTTCTGAGCACAAGGATGTCTTTTTAAAGAAGAATGTCCATTTTTATAAGCATATTTCTATGCAAATGTTAAGTCTGATGAAGATACATGCAAGATAAAGTGTATTTTCCTTTGACTCTGGGCATTTCTTACAG
Seq C2 exon
GTCTGCAACTTACAGCTACTCAGTCTATTTCCATAACTCAAGTGATGAGCAGTTTACAGTTTGAGAATGTGGATCATCACTACAGAAGAGGAATTCCTTATTTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACAGATGGCTGCCTCT
R:
AGGAATTCCTCTTCTGTAGTGATGA
Band lengths:
212-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]