GgaINT0112591 @ galGal3
Intron Retention
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79428923-79429773:-
Coord C1 exon
chr1:79429722-79429773
Coord A exon
chr1:79429007-79429721
Coord C2 exon
chr1:79428923-79429006
Length
715 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTTAGTATTTTTCTCCACAGATG
3' ss Score
9.93
Exon sequences
Seq C1 exon
CCTGAAGGCATAAGAAGGGAAGAGACCCAGAACTTCTTGATCTGCATGAAAG
Seq A exon
GTAAGTGCTCAATTTACTGCTGAGGGAAGGGAAGGCTAGGGAAGGGGAGATTGGATTTCCCACTCATTCCTGTTCGTTGATGCTGTCCCCCCATTTTTTCAGGAGATGTTCAAATGGCAGTTACTTACATATTGTAGCTACTAAATCACAGTGCATAGTGTTCAACTCACAGCTACAAAGTCTGTGTTACCTAGTGCATGTCACTTAAGCAGTGTCTATGCTTCAGTCAAAAGTGCTCAGATAATGAAGGAAGGTCTGTGAAGATATTGAAAGGAGATTACCTTTTTCTTTTTTTTTGTTGCAAAATCTACTCGACTGTACACAGTCATGTTCACTTTTTGTCTATTCCAAGGATATCTGCAGCTTTCACCTTCCTTCTTATAATGGGAATGGAACCATCCTATCATCTTGATGCTTACTGTAGTTTTCTGTTTCCTAGAAAGCTGCTAAAAGAGGCGTAAAGGCAGCCCTGACACTCACCAATCAGCTCTCCCCAGTACCACACTGAAGAAATCCAAAGAGTTCACAGACATTACAGACTGAGCAACAGCCTTACCTTGTTCAAATGATTTCTGTTGAGCAATGACAGTTACTGCATAATCTGAGCTATTTTTCACTGGATAGTTTTAGCTGCACTCCCTTCTCTCCTGATGTTTTTGCTGTAACCAATGTTCTAAACAAATATCCACAATATACTTAGTATTTTTCTCCACAG
Seq C2 exon
ATGATGTCATTTCTCAGGATGTTGCTATAGATCTACCTACAAATGTGGTAGAAGGATCACCCAGACCTTCCTTTTCTGTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0020717=A2M=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]