GgaINT0112593 @ galGal3
Intron Retention
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79427527-79428289:-
Coord C1 exon
chr1:79428113-79428289
Coord A exon
chr1:79427609-79428112
Coord C2 exon
chr1:79427527-79427608
Length
504 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
TCTCTTTCACATTCTTTCAGGCT
3' ss Score
10.05
Exon sequences
Seq C1 exon
GTGACATCATGGGCACTGCCATTCAGAACGTGCACCAGCTCCTTCAGATGCCATTTGGCAATGGGGAACAGAACATGGTCCTGTTTGCACCCAATATCTATGTACTGGATTATCTGGACAAGACAAGACAGCTGAGTGAAGATATGAAGTCCAAGACCATTGGATACTTAGTGAGCG
Seq A exon
GTGAGAGTTTTGTGCATCTTTCTACAGTGTATGCTGAATCATATTGAGGCATAGTGAGCAGAAGCACTAGCATGGCTATTCAAGCAGTATGGCACTGATGCTGTAGCACAGCTCAGAGATCCAAGGGACTGCCTCGCTTTTTTTTCTTTCCTTCTCCTGCTCTACTGAAACTCAGTCATCATGTTTCCTTTGAGGTTCTGTCTTTAAGTCCCTTCCTCCTCTTCCACATAGGCACAGCATCTGCCCTAATCCTGTCTACTTAGGTGGAGCACAGAGCTGACATGAGCTACCTATTCTGTGACTAAGTGTTCCTACAGGACAGGATGTTGTATGTCCACAGTTAAGCTCCTTCAGAGCTTCCCCACTGTATGGCAGATGCATTTCACCTTTCCGTGCTTTCCCAATGTGATACCATGTAAATCTGATGGAAAATAGAAAGAGTGTTTTTTTTGTTTGTTTGTTTGTTTTTAATTAGATAACATTTTCTCTTTCACATTCTTTCAG
Seq C2 exon
GCTACCAGAAGCAGCTATCATACAAACATCCTGATGGATCCTACAGCACATTTGGCATTAGAGATAAAGAAGGGAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(34.9=48.3),PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(6.2=1.7)
A:
NA
C2:
PF076789=A2M_comp=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATCATGGGCACTGC
R:
CAGGTGTTCCCTTCTTTATCTCT
Band lengths:
259-763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]