GgaINT0112593 @ galGal4
Intron Retention
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75785043-75785805:-
Coord C1 exon
chr1:75785629-75785805
Coord A exon
chr1:75785125-75785628
Coord C2 exon
chr1:75785043-75785124
Length
504 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
TCTCTTTCACATTCTTTCAGGCT
3' ss Score
10.05
Exon sequences
Seq C1 exon
GTGACATCATGGGCACTGCCATTCAGAACGTGCACCAGCTCCTTCAGATGCCATTTGGCAATGGGGAACAGAACATGGTCCTGTTTGCACCCAATATCTATGTACTGGATTATCTGGACAAGACAAGACAGCTGAGTGAAGATGTGAAGTCCAAGACCATTGGATACTTAGTGAGCG
Seq A exon
GTGAGAGTTTTGTGCATCTTTCTACAGTGTATGCTGAATCATATTGAGGCATAGTGAGCAGAAGCACTAGCATGGCTATTCAAGCAGTATGGCACTGATGCTGTAGCACAGCTCAGAGATCCAAGGGACTGCCTCGCTTTTTTTTCTTTCCTTCTCCTGCTCTACTGAAACTCAGTCATCATGTTTCCTTTGAGGTTCTGTCTTTAAGTCCCTTCCTCCTCTTCCACATAGGCACAGCATCTGCCCTAATCCTGTCTACTTAGGTGGAGCACAGAGCTGACATGAGCTACCTATTCTGTGACTAAGTGTTCCTACAGGACAGGATGTTGTATGTCCACAGTTAAGCTCCTTCAGAGCTTCCCCACTGTATGGCAGATGCATTTCACCTTTCCGTGCTTTCCCAATGTGATACCATGTAAATCTGATGGAAAATAGAAAGAGTGTTTTTTTTGTTTGTTTGTTTGTTTTTAATTAGATAACATTTTCTCTTTCACATTCTTTCAG
Seq C2 exon
GCTACCAGAAGCAGCTATCATACAAACATCCTGATGGATCCTACAGCACATTTGGCATTAGAGATAAAGAAGGGAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
NA
C2:
PF076789=A2M_comp=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATCATGGGCACTGC
R:
CAGGTGTTCCCTTCTTTATCTCT
Band lengths:
259-763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]