GgaINT0112602 @ galGal4
Intron Retention
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75773013-75773989:-
Coord C1 exon
chr1:75773921-75773989
Coord A exon
chr1:75773119-75773920
Coord C2 exon
chr1:75773013-75773118
Length
802 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CTTCATCCTTCCATTCCCAGATC
3' ss Score
10.21
Exon sequences
Seq C1 exon
CTCATTGATGACCATACAGTGATGCAAGTAGAATACAAGAAAAACCATGTTCTCCTTTACCTGGGAAAT
Seq A exon
GTAAGTACCAAACACTGGCTATTTGATTTAAACAAATAATAAAGTCAGCATGTAATAGATGCACCTACAGTGAGGTTTCATTCTCTGAAGTGCCCAAATATATTCTCCTCCCCATCAGCTTTGCCCTCTACTCAATAAGCTGCTTATTCCCCAAACTATGTAACATCCCGAACTCCCACAAATCTTCAAACTGATACCTGCCCTATTAGAAACTAGAATGAAATTATTTTAAAAAGTATGAATAAACTAATAAAAAATCTTTCTCCTTTCAGTAAACAGTAAACCAAGTAAACCAAGTAAAATTTCAGTAAACCAAGGAGGTTCTTTTATGTATATGTTCTCTGAGTAGGGTCCTATTAAATCCCAGTTCTTCTAACAGGACATGAAACACTACTAAGATATCTGGGGAAAAAAAAAATCATTCCTTCTCTTACTTCAGTTCATTCCCAACTCTATTTTTTAATCTAATTCCTGGACCAGAATGTACATATAAAAAATACAATTGCTTGGAGAATTAAGATCAGTCTTTTGAGACATCTTTTCTCTCTCTTGCCTCAGGCCAATAGGATTTGTTTATCTTACAAAGTAAGGTAATACAAGCAGGACTGGAAACCTACGGCTCTTCTCTTCAGTTTCACTTTGGACTCTTCAAAAATATTTTTTATCTCAACTTGGCAGGCAGATAATGGATTTCCCACATCTGTATGTAGGGTACCAGTGGGATTGGATATATAACTGATCAATTCCAGATTGTGTTACATGAACAAAATGTCTTATGTGATCTTCATCCTTCCATTCCCAG
Seq C2 exon
ATCTTGCAAAAGAGGAGAAAAGAAGTCACTTTCTCAGTTGAACAGGACTTTGTAGTGACCCATCCCAAGCCAGCTCCTGTGCAGATCTATGATTACTATGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(24.7=100)
A:
NA
C2:
PF076779=A2M_recep=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]