GgaINT0112602 @ galGal3
Intron Retention
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79414762-79415738:-
Coord C1 exon
chr1:79415670-79415738
Coord A exon
chr1:79414868-79415669
Coord C2 exon
chr1:79414762-79414867
Length
802 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CTTCATCCTTCCATTCCCAGATC
3' ss Score
10.21
Exon sequences
Seq C1 exon
CTCATTGATGACCATACAGTGATGCAAGTAGAATACAAGAAAAACCATGTTCTCCTTTACCTGGGAAAT
Seq A exon
GTAAGTACCAAACACTGGCTATTTGATTTAAACAAATAATAAAGTCAGCATGTAATAGATGCACCTACAGTGAGGTTTCATTCTCTGAAGTGCCCAAATATATTCTCCTCCCCATCAGCTTTGCCCTCTACTCAATAAGCTGCTTATTCCCCAAACTATGTAACATCCCGAACTCCCACAAATCTTCAAACTGATACCTGCCCTATTAGAAACTAGAATGAAATTATTTTAAAAAGTATGAATAAACTAATAAAAAATCTTTCTCCTTTCAGTAAACAGTAAACCAAGTAAACCAAGTAAAATTTCAGTAAACCAAGGAGGTTCTTTTATGTATATGTTCTCTGAGTAGGGTCCTATTAAATCCCAGTTCTTCTAACAGGACATGAAACACTACTAAGATATCTGGGGAAAAAAAAAATCATTCCTTCTCTTACTTCAGTTCATTCCCAACTCTATTTTTTAATCTAATTCCTGGACCAGAATGTACATATAAAAAATACAATTGCTTGGAGAATTAAGATCAGTCTTTTGAGACATCTTTTCTCTCTCTTGCCTCAGGCCAATAGGATTTGTTTATCTTACAAAGTAAGGTAATACAAGCAGGACTGGAAACCTACGGCTCTTCTCTTCAGTTTCACTTTGGACTCTTCAAAAATATTTTTTATCTCAACTTGGCAGGCAGATAATGGATTTCCCACATCTGTATGTAGGGTACCAGTGGGATTGGATATATAACTGATCAATTCCAGATTGTGTTACATGAACAAAATGTCTTATGTGATCTTCATCCTTCCATTCCCAG
Seq C2 exon
ATCTTGCAAAAGAGGAGAAAAGAAGTCACTTTCTCAGTTGAACAGGACTTTGTAGTGACCCATCCCAAGCCAGCTCCTGTGCAGATCTATGATTACTATGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(24.7=100)
A:
NA
C2:
PF076779=A2M_recep=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]