GgaINT0112636 @ galGal3
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56854625-56854931:-
Coord C1 exon
chr1:56854839-56854931
Coord A exon
chr1:56854733-56854838
Coord C2 exon
chr1:56854625-56854732
Length
106 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGC
5' ss Score
5.06
3' ss Seq
TTTTATATGTTTTGCAACAGCAA
3' ss Score
7.26
Exon sequences
Seq C1 exon
GTTCTGATCCCCCTGCGAAGCACCATCATGCCAAGGCTACTGGCCCGTCTCGAGCAAATGCCTGACTACTCCATTTTCAGGGGCTACATTATT
Seq A exon
GTAAGCTTTCACACCTTTTTAAAGATAGAAGCTTGAATTTGAACTGTTATCAGCGTATCAGTGATCACCCTGTTTTGTTTTGTGTTTTTTATATGTTTTGCAACAG
Seq C2 exon
CAATACGGCCTGGCAAATGAAATAGAAGCTGCAAACACATACACAGTGTTTGCCCCAAATAATGATGCCATAGAAAATTACCTGAGGGGTAAAAAGGTTGCTACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(2.4=9.7),PF0246917=Fasciclin=PU(8.3=32.3)
A:
NA
C2:
PF0246917=Fasciclin=FE(29.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGATCCCCCTGCGAAG
R:
AGCAACCTTTTTACCCCTCAGG
Band lengths:
195-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]