MmuINT0153414 @ mm10
Intron Retention
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86907138-86907431:-
Coord C1 exon
chr10:86907333-86907431
Coord A exon
chr10:86907246-86907332
Coord C2 exon
chr10:86907138-86907245
Length
87 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
GTCCTGTCTTTGCTTTGCAGCAT
3' ss Score
10.1
Exon sequences
Seq C1 exon
GTGCTAATCCCCCAAAGAGGTCTAACTGGCTCCTTACCCAGTCTACTCACCCGTCTGGAACAGATGCCTGACTATTCCATCTTCCGGGGCTACATCATT
Seq A exon
GTAAGTACCATGTTCTCTGCATAACCATCTTGTCAAGCTGTCGGGGAACTGGAATCCCTCACTGGCTGTCCTGTCTTTGCTTTGCAG
Seq C2 exon
CATTACAATCTGGCAAGTGCAATCGAGGCTGCAGATGCTTATACTGTATTTGTGCCAAACAATGAAGCCATCGAAAGTTATATCAGGGAGAAGAAAGCCACCTCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459:ENSMUST00000035288:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(2.4=9.1),PF0246917=Fasciclin=PU(8.3=30.3)
A:
NA
C2:
PF0246917=Fasciclin=FE(29.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCAGTCTACTCACCCGTC
R:
AGGTGGCTTTCTTCTCCCTGA
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types