GgaINT0112672 @ galGal3
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56823110-56824190:-
Coord C1 exon
chr1:56824083-56824190
Coord A exon
chr1:56823239-56824082
Coord C2 exon
chr1:56823110-56823238
Length
844 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CACCCTGTCCACACTTCCAGGCT
3' ss Score
8.14
Exon sequences
Seq C1 exon
ACTGAGACCAGATACGTGGATGGAAGTGCTATTGTTGAGTGGGATATAGTCGCTTCCAATGGGATAATCCATGTCATTTCAGAGCCTCTGAGGGCTCCGCCAGTACCT
Seq A exon
GTAAGTACATTGGGACTTCTGGGTGGCTGTGGCTTATATCCCAAATTAATTTCTGATATTCATATATTCCCAGTTTCCCTCCCATATATACAGTTTCAGTTTAAAAGATTATGTTGAAAGAAATTCAGAGGGTGAGAACAAAGCGTTAGCGAAGCTTGTTCTTCCTATGTATGTTTTTTTCAATTCAAATCAATCTCCTCAGCTGTTGTGCACTCATCCAAGCTTTCATAAAGATCCCTTTGAATTTTTCCAAAAACATCTTTCAAGCTTCCGAGGAAAACTTCTGACTGTTGGTTTTTGCACTCGTTCCTTTCCAAAACAAAGTGTTTTCAAAACTCAGAATATTTGTTTTGCACGCATAAATTCCTGCCATGGCTCCAGTTATCCCATCCATGAGGGAGAGCAGCCAAGCCAAACCCAACAGTGCATGGCAAAGCAGCACAGTGCAGAAAGGGCTGTTCTCAGTTCCTTTGGGCCCTTTCACTCCATTCAAGATAACACACCATTTTGTCAGTCTATAGCACCACAATAGTAACAGTGTACATATTATTTTCTTTGTAACTCACATGCTAGAGGCAACCATTTTCTAATATTTAGCTATACAACTGCACTATACTTCAGTGCAAAGTGGATATCAGTCAGGACCATTAAGGGATTATTTTTTCCAGGGTAAATGTAGAAACCCTTTCTCTAAGGAGAAGGCCACGGAGGCATCATAGAGAAAAGAGAACTCCACCATAAAAGCAGTTATGGCTTCAGCTGTAGCTCAGGGAGACATCACACTGCTTGGGTGCTGGCGGGCAAACAGTGCATACCCCACAGCTCACCCTGTCCACACTTCCAG
Seq C2 exon
GCTCATCTCCACGCCGGTACAGGGACAGGGATATTCTTTGGCATCTGCCTGGTTATTGGAATTGTGGCCTTCATCGGATACTCGTACCTCCGATTCAGGAAGAAAAACACAGGCTTCCAGCACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(24.6=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATACGTGGATGGAAGTGC
R:
CTTGAAGTGCTGGAAGCCTGT
Band lengths:
230-1074
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]