RnoINT0144396 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27373813-27374665:-
Coord C1 exon
chr7:27374558-27374665
Coord A exon
chr7:27373908-27374557
Coord C2 exon
chr7:27373813-27373907
Length
650 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
CCTTTCCTCTCTGTGTGCAGACG
3' ss Score
10.81
Exon sequences
Seq C1 exon
GAGACCAGGTTTGTGGATGGAAGATCCATTCTGCAGTGGGACATCATCGCCGCCAATGGAATCCTCCATATTATTTCTGAACCTTTGAGAGCTCCTCCCACGGCAGCA
Seq A exon
GTGAGTACTCAGGTTCCGGCGAGGACCCGGGGAAAGTTACGCACGCATTCCCCAGACGTCTACCAAGCTTGCAACCCTGCTAGTTTGCTGATCAAAAGGGAAGGATGAGTCGGGGGAGCCAGCGTAAGGGAAGTGAGAAGTCCTAAACTCCCGTTTCTGGGTGTCTCTGAACCTCAGTTTTCTCGTCCACACAGTGTGTGCTGGGGAGCTCACAGCACTTCCCTGTCCTGGGAGGACTGCATGGAGACACACCGAGTCCTTAAGGCAGTTGCTGGCACAGCCACATGGTCCAGAAAGGATGGCTGGTTATCGTTAGCACCCTAACAGTTTCCCAGGAGCACCCACAGTGGTTGTGCAAATAAAGTCCAAACCAGACTAGCTTTAAAGCTGGTTCTGCTTCTAGAAAGCTGCAGTTTGGGCAAGTACTTATCCTCTCTGCCTCAGTTCCCCACATAAAAATGGGGAAATGACTGTCTGTACCCTTCAGATCATTTTAGTAGGCTCTGGCAGTGATGAGGCCTAAGACTGTATAAATTTGACATTGTTTTTTGAGTCACTCCAAGGTGCCTGGGCAAGCGAGGGTAAACTCAGGCACCCTCTCCGGGGGAAGCTCCAGTTTAGGAACTGACCCCTTTCCTCTCTGTGTGCAG
Seq C2 exon
ACGGCTGCCCACTCTGGCCTGGGGACAGGTATATTCTGTGCCGTCGTCCTGGTCACTGGTGCGATTGCTCTGGCTGCTTACTCTTACTTCCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:75
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(25.8=86.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCAGGTTTGTGGATGGA
R:
CCGGAAGTAAGAGTAAGCAGCC
Band lengths:
201-851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]