GgaINT0113145 @ galGal4
Intron Retention
Gene
ENSGALG00000006606 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr1:7498749-7500078:+
Coord C1 exon
chr1:7498749-7498851
Coord A exon
chr1:7498852-7499940
Coord C2 exon
chr1:7499941-7500078
Length
1089 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
AATTATTATGACTTTTATAGGAT
3' ss Score
7.34
Exon sequences
Seq C1 exon
ACCTCCAACATCAGTGACAGGAGCAACTGGGTCAGAACTAGGACGGATCACTTTTGTTTTTGAGACCATCTGTTCAGCAGATTGCGTGCTGTACTTCATGGCG
Seq A exon
GTAAGTGAGACCCCTCTCTCCATGACTGACGACTGAGCCTGGTATTCCACGTGTCACTTTAATACCTCTGCATAGGTGTGATTAGTTGCACTTGGTTTATTGTGACTAAGATTAAGCGTGATATTAGTTTTATATCTGGGGTGCCCTTGCAGAAAGGATTTAATTAATAGCCCAGCAAAATTCCTCCACTATTAGAATTGTGAGCTGTTGTTGGTTATTTGTTTATTTTAAAAGAGATTGTTTGTCACCAAAAGGCCAAATTTCCCTTCTTAAACCAACTGATAAATCTCTCAGTGGCCCTTGGATGGTCACGTTTTTCTCTATCAGTTCCAAAGCATTTCGTGTGGGAAGGGATGATAAGAAAAGGGAAATCAGGAAGTTTAGTCTTAGTCCTGTCAGTGACCTGGGGAATCTGCAGGGCTGCAGACATTTCTCAATGAAAACCAAGTGTCATGTTTTTGTACTTTTCTTGTCCATCAGCTGAGGAAGGTAACCAAATCTGTGACCACTCCCTTGTTCCTTCAATTGCAGTGAGAAGCTGGTGCTTTTTTTTTGTATTTAGTGGTAATTTATAGAAATCTGCTCCATCTTGGACTAGAACATATGCCACTGATGGAGAATAAGAAACACAAAGATAGGCTGAATGGGGTTTTCTTGTGTAAATTTTGGTACTGTTTCACTAGAGACATCAACAAGCTGGATATACAGAGATGGTAGAAACTACAGTATTTCTTTGAATTTTAATTTTCCTCTCTCTGTGCTCTGGGACCCACATGTTTTATACATAAACAGAATTTGAAACCTCAGCCATTGTGCTGAATCTTCCTTGTTCATAATTGGCCATAGGACTTTAAACTTAACTGCTGTGTGAATAAGAGCATCTTTTAGAATGGATGCCTGTTCTCAGCTGGAATATTGCCAGTGATGGAAAGCAGGATAAATATGTTTGCTTCCTTTTATTAAATGTTAAGTGCAATTGTAAAATCCTTTATATGTATTAACGACTATATTATAAAATGCTAATGTTTAGTATAGCATGACTCCACTTTCGTGTTGTTTTTTTTTAATAAATTATTATGACTTTTATAG
Seq C2 exon
GATATTAATCGAAAAAATACTAATGTGGTGGAGTCATGGGAAAGAAGTAAAGAGAAGCAATCCTACACTCATATAATCTCCAAAAACGCTTCCTTCACCTTTACTTGGGCCTTTCAGAGAATAAATGAGGGCCAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606:ENSGALT00000010664:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCAACATCAGTGACAGGA
R:
TCTTGGCCCTCATTTATTCTCTGA
Band lengths:
240-1329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]