HsaINT0086702 @ hg19
Intron Retention
Gene
ENSG00000164659 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:21945]
Coordinates
chr7:86544039-86547860:-
Coord C1 exon
chr7:86547758-86547860
Coord A exon
chr7:86544177-86547757
Coord C2 exon
chr7:86544039-86544176
Length
3581 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GTTTTTCCACTATATTTCAGGAT
3' ss Score
9.34
Exon sequences
Seq C1 exon
ACCACCAACATCTATGACTGGAGCCACGGGTTCTGAACTAGGAAGAATAACATTTGTCTTTGAGACCCTCTGTTCAGCTGACTGTGTTTTGTACTTCATGGTG
Seq A exon
GTAAGTGGACGGGCGGCTTTCAAAGGCAGATTTCTAAGCTTAGCATTCTCCTTCAAGTGTAAATTTATTTGTGGCAAGTTGGGATAAGAATTCCTTTTTTTTTTTTTTTTTTTTTTTTGCTATTCTTAGCACCTTTCACAAACATTAACAAATGTCTGAAGAAATAATTAAGAATTGTGCAATGAAGTCCACAAATAAAGTGTTTATTCCTCATGGGAAAGACTAAGTGAGGGAGCTTGGGTGACTGATAGAGGCCAGGGAATATTAATCTGGTAAAAAAAAAAATTCCTTCATAAAAACGTCACCAGCAGAATGAAAATTCTCACCTGATAACCATTCAGCTATTTGAACTATCCGGAAAGAAAAAACATTGTACTAATAAGTAAGAGCAGAAAATAATGGAGATGTAGAACATTGAGAAGAGAGCATTTAGAAAAAGAGTACTATGCTCATGTCATAATTTTGCCCATTTCTTTTCTAGATGTCATACAAATCTCTACTCTTAGCTTGAGGAAAGTATCACCATGAAATTTGCTAAGACCTTATGTGAGATTTAGAAGTTTGTTGGCTAAGAGTTTAACATTACAATTAAATAGTTACTTCACAGACCTGCTTTGTTTTTGTGTTTTTTTTTCCCAATGACCTTTTAGTAGCCAGTTAACAGTTTATTAACAGTTTTCTCCGTGATATGTAAAATGTGAGGAGACTTAAACATTTATTTGTGATTACTGATAGCTTAAATGAAGGCAGACTTTGTTTCTGAAAAAAAGTATCCACTTTGTGGCAGTAAAAGATCATGAATAATCTTCAACACAGCCATCTATATCACAAATAACCCGTAAGTCTTCAATTCTCCCAAGTCTGCCTCCTTATTTCTTTAGTCTGTTCTTCTCATACTCAGTGCCATTGCTGAAATGCAGACTAATATTATCTCTTAACAGGATTATTCAGTAGTCTCCTATACGTTCTTCTCATCTCTACTCTTTCATCTATACTGCTGTCAAAATTATTATTTTTTCTTTTTGGAGACAAAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAACCTCTGCCTCCTGAGTTCAAGTGATTCTCCTGCCTGTCTTCTGAGTAGCTGGATTTACAGGCATGCCCCATACGTCTAGCTAATTTTTGTATTTTTAGTAGAGATGAAGTTTCACCATGTTGGCCAGGCTGTTCTTGAACTCCTGACCTCAGGTCATCTGCCCATTTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGTCACCGCGCCCAACTAAAATTATCCTTAAACATAAAAGGAACAGTAGAGGCTGGCGTGATGGCTCAGTTCTGTAATCCCAGCACTTTGGGAAGCTGAGGTGGGTGGATTGTTTGAGCCCAGGTGTTTGAGAGCAGCCTGGGCAACATGGCAAAACCCCATCTCTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGCTGGCCACAATGGCGCATGCCTTTAATCCTAGCTACTTTGAGCTACTTGGGAGCTTTAATCCTAGCTACATGATCATGCCACTACACTGCAGTCTGGGCAACAGGCCCTGTCTCAAAAACAAAACAAAGAAGACACCCCAAAATTCAACAGTAGAGGCTTGAACAACAAAGCTATCCCTTCCCTTGGTGCTTTTTATGGCCTATAGCAGTGATTCTTAAAGTGTGGACCCTGGACCAGCACCACCTGGGTCCCCTTGGAAATTGTTAGAAATGCACATTTCTGGGTCTCAGCTTAGTCTTACTGAATAAGAAACTCTGTGGTCACAGCAATCTGTATTTTAGCAAGCATTGTGGGTGGTTCTGAAATACTTTAGAGTTTAAGAACCAACAGCCTCTGAATACACTTCAAATTCTGTAACATGGCGTCTTTATGGCTCTTTCTTTCCCCAGCCTCTGTTTCCAAACCTGCTTTTATGACTCACCTTTCTTTAGTCACCTGAATTTGTTGGTATTAGTGGAACACTCTGTACTTTTTCATTCCCTATGTGTTGACACTCTAAGCTAGAATGACATTTTTCCTTTTGCTGTTTTGTCTGATGAACTCCAATCATACTTCAGTAGCAGCTCAAACTTCACCTTTTCTCAGAAGCTCTCTCTTACTCCTTTCAGTCAAGTTAGCCACTCTCTCCAGTGTGCTTCTAAAACCCTTTGAAAAATCCCTGCTTTAATTATGTGAACTTATTTATGTTTTTGTCTCTCCCACTTGACCAGGCATCCCTGAGAGTAGGGATCTTATGATATTTGTATTGAGGAATCAATCCTAGAGCTTTCAGCTTTTGGCAAAGTCTGCCATTTTCTTTCCTCTTTGTGTGATGATCTTCTCACAGGACTTTTGGAGATCTCAAACCAAATAATATATAAAATGCTTTGAATATCATGTAGTGCTTCACAAATGTAAGGTGATATTATGTGCACTAATGCATTAAATTTCAATTATTATAACCCATAATGATGTTTAATGAAGCACCATCAATATATTATGAACTGCTTTTTGGGAATGATGATTTCATTGTTTGGTTACATGAGGATTTCTATAATGTATGATGAGCATTTTCTGTTATTCCTATCTGTGGTGTGAACTCAGGATGTGTCTCTTTAGAGCATATTTGGTTACTTTATCACATGTTTGATTCCTGTATTATCAAAGGATGAAAAACAAAGAGACTTGTCTTGAGCTCATGAAACCTTATTGCCGGCATCCCAGATAACTAATGGAAGCCCATCCAAATTCCTAAGTGATCTATCAGGATTTCTGCCAGGAAAATTAGAAAATTCAGAGTTTAGGCTTGGTTTTCTTTTTATATAAATTAGATGTATGTTACATTATCTGGTCAACTTATTAATATTTGCTTTCCAGTCATGTTAATGACAGCATATCAGTTGGAATATCACAAATTTGTGTGATTTTAATATTATCTTGAATTTAGTTAAATAAATAATAAATAAAATATAAATTAAACCTTTTGGAAGTCAAGTATAAGCAAGAGAGGATTTCATGAACATTAAATAACATTCTGCTTAACATGCACTTGGATAAAGTCACCCTGGAACTTGCAAGTATAATTCAGGGGAACTTGGAATTCCTATGTAAGAGCTCCCTATCAGAATCTCTGAAGGAAAAAGATAAAAAATTTGAAGGCTTTCCATTCAATGATAACTTTAGAAGTTTATTGTAAGAAGTTTGAGGAGTTATGTTTCCTCTTCTAAGTATATATCCCAAGCCAGATCACACACATGAAACAAAAATAGAAAATAAAAACAAAAAAAACCCCAACCCTTAAACATATTATGATTTGAGACCTCTTTCAAGTTATATGAACAATGTGGTTGATATATTGTGATTACTGAGTGAGGTGCCTGTGCAGACTTGAAGGCAAGTTTTAAGAGTTCTGGGATTACATGCTCTGTTTGTAAATAGTCATAAACTGTAATGGGTTTACTTTAAATATGAATACATTTGTAATATATACACAGGTATATTAATGTTGAGTTTGTGCTTTATTTGAATATAGTTTTTCCACTATATTTCAG
Seq C2 exon
GATATTAATAGAAAAAGTACAAATGTGGTAGAATCGTGGGGTGGAACCAAAGAAAAACAAGCTTACACCCATATCATCTTCAAGAATGCAACTTTTACATTTACATGGGCATTCCAGAGAACTAATCAGGGTCAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164659-KIAA1324L:NM_001142749:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)