GgaINT0113152 @ galGal3
Intron Retention
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8117711-8118710:+
Coord C1 exon
chr1:8117711-8117837
Coord A exon
chr1:8117838-8118531
Coord C2 exon
chr1:8118532-8118710
Length
694 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
CTATGATTTCTATTTGAAAGGAA
3' ss Score
4.01
Exon sequences
Seq C1 exon
CTCATGCCCTGCTGGCACCTGCGATGGGTGCACTTTCTACTTTGTGTGGGAAAGTGCAGAAGCTTGCCCTCTGTGCACAGAGCAAGACTACCATGAGATCGAGGGAGCCTGCAAAAAAGGATTTCAG
Seq A exon
GTACACCACCCCCAGCTCCAAGTTGTGTGTGTTAATTTGGGTAAATCTTGAAAGCTGTTGAAATTCTTTGTGCAAGTGGACATGTTAAGTGCAGGTAGAATTGGGTATCTCTGGCTGTGTTGAGACTCGGGAATATTTGTGCCCATGGCAGCTCTCCTCTAGCTTGTGTCTGTATGGGTAAAACCTAAACTCTAGATACGTTCCTACATGCAAGCAGGCTGTTTGTAGAATGGAGTCCCTAAAGGACATCAGTCCTTAGGTAGCCATAATCATCATGGCAGACTAGACAGATTTCAGTTTAGAAATTCATCTTTCCTTGTTTGCAGTGTTTTTGCTACTGCCTCTGCTAATAAAATATTAGGAAATCCTTTCACTGGTTCAGAACTGCCCTGTTGATAAACATCTCCAAAGCAGGCACAGCCAATTCACAATCCCTGTCCAAACTAAAGCATATCAAGTGGGGATCATTAAAGAAGCAGAAACCCTTTTGCCACATTTGAATCTACAGCTACAATCAAGGGGACAGCTGAGTTGACAATATGACTGAAAACCAAGCACGTGCTTTGGTTTTCTTTTACTGAAAAGATGTCTAGCCCACTTACCAAAAAACAGGTTGTTTATTTCAACTTTAAATAGTTCTCTCTTTTCCTACAAACAGCTTATTTTCTGGTGTTCTATGATTTCTATTTGAAAG
Seq C2 exon
GAAACCTTGTATGTATGGAATGAGCCGAAGCATTGCATTAAAGGGGTTCCCTTGCCAGAGAAAAGGACCAGCACTTGTGAAACGGTGGATTTTTGGCTAAAGGTTGGAGCTGGTGTGGGTGCTTTCGCTGCTGTTCTGCTGATAGCCTTGACCTGCTATTTTTGGAAGAAGAACCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606:ENSGALT00000010664:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGCACCTGCGATG
R:
TGGTTCTTCTTCCAAAAATAGCAGGT
Band lengths:
295-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]