GgaINT0113154 @ galGal3
Intron Retention
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8121379-8124593:+
Coord C1 exon
chr1:8121379-8121544
Coord A exon
chr1:8121545-8124533
Coord C2 exon
chr1:8124534-8124593
Length
2989 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ACCTGTCTTTTCCATTGCAGGAA
3' ss Score
12.81
Exon sequences
Seq C1 exon
GCTGGAGTATAAATATTCCAAATTGGTGATGACAGCGAACTCAAAAGAGTGTGAGCTGCCAGCTGCTGACAGTTGTGCTATAATGGAGGGGGAAGATAATGAAGAAGAAATAGTATATTCTAATAAGCAGTCACTGCTGGGGAAGCTCAAGTCCTTGGCAACAAAG
Seq A exon
GTAAGTGGTAATTAGTACTATTAATACTAAAAATAATTATTACCATTATTTATCACTGGATGTGATGAGGCTGTGATGCTAATTTCCACAGTGCTTTGTGTAGCCTCCAGCACACACATCACCCAGTTTGCTCTCAACCTGCTGAAATCCACAATGTGAGTAATGATAAATGTTTCAGGGAATTAAAGAAACGCTTCTTCTTCTGCAGGGAGCTTCCTGAAGCATTCTTTATTGTATGGGCCGTGTCTAAAAAGAGGCATGGGAAACCTTCTGGATTCCTACCAGATACCTCCACTGAAGCAAACACAGCTATTATAGATACAGGAAATAAACATCAGAACAGCAGTCAGCTGCTTCCCCCTCACCTGGGCTGACTTCATGGCTGACTTGAGAGACATAATGTTCAGGATTATAGTATTCAGATGAAGAGAAGCATCAGCTAAAGCCCATCACCCAATACAGCAACCTCCTCCATTTTGTTGGAGAGCAATAGCACTGAGCATTTTTTTTTGCAGCATGTGATGCAGCGTTGTTATATGTTTGAATTTCTAGCACAAAGGTCTTTTATGTCCTTTGATTATTTCTCATAGGGACAACAGAGGGCTGTCATGGTAGATCCCACAGGCATTTTCATCTTTTTCCAAATGCTTTGCAGTCGGTGGGAAAGTTGGTGTTGTCTTTAAGGGAGTCCAGCTGGGGCATCTGTTATTACAGGAAAAAGGTGGATGACATTTTCCCTTTCACACAGTTCTGCTGAAGAGAGTTGTTTCCAAATAAGAAGGTTTCTTCAACAGTAATAATACAAAGAATCTTTTGAAAAGCGACTTTTTTGTTTCTTGCCTACATGGTATTTCAGAAAGTTGAATTTGGGGATTTTTTTCTCATATTCTTTGTTTTCCTTTCTGTAATTGAGTGCAATGCAACGTAACTGTGTGTCTTTTCTTTCCCTTATTTTTCCTTTCTCTTGACTGTCTTCAATTTTTATTAGAGTGCTTTTCTCTTTCCACCTAAGTGTTCCCCAGATCTCCCTCCAAGGACATGGTAAACAGCTAATGTGCAAAACTTCTTCTTGCCCCCACCTTGACTATTTGTCTTGTAAAGTCAGTACCTTTCCTTGTGGAAAGGTGAGAAAATGTAATGCTAAGGATTTTGGAAATGTAAATAAAATGAAAGCACATCAAATTTTGTGCAGCTTTTTACAACAATGGAAGTAGATTCCATTTTGAATCCTGCAGGAATAACTTTCCCGTAGAACTTTGTAGGATATAGGATGGTATTTTTTTGTACATGAAATGGCTTGGCTGGCTGTGGCTGGGCGTGATGACCAGTGCTGCTGAGGGTTATGTTTTGCTGTACGCTTGATAACTGTAAAAGCTTTGCTGACTCAATTTGCAGCACCAACCACTGGCTTCTGCCTGATTAGAAGTATAGAGATGAGAGTGTGGGAGAAAAGTTGTTTTTTTTTTCCCCTTTTTTTTTTCTTTAAAGTAAGCTTTAGTGCTATAGTATTTAGACCACTTGAATGGAAAGAAACTCCAAAAGAGTTTTTTAAAGTTTCTACATCCATTGTAACAGGCTCCCTGAGTATTCTCTCCTTTTTAAAAAGCCTGTCAGATATTTCTAAGCTGACTCCTTTTTTTCCTACTAGATAATCGTAGCTGGCAAAGTCAGCTTACAGTACCTCATTAGCTCACTGAGATCTGTGTCCTGTATCCCTGCAGATAACCGGAATTTAATATATATTTCTCCCCAAAACAAATGTTACAGACATCATTTTTCATTTATGGAGAAGGTGAGGAAATTCATCTCCTGATGCATTTGCATGTAAAATGCAGAAAAAAATATAGAGAGAAAAGCAGAGGAGAAAAAGAGAAGAAATTTAAATGGAGAGACAAAGAAATAACTATCCTAACTATATGTTCGAGCTACAGGCAATGGCATTTCTGTGAGACAAAACATCTAATGAAGCTATTAATGGCTCTGAGAACCCAAGCAATTTAGGGCTAGGACTGTAATATAGTAAGAAATAACTATTATTTTTAATGAGAATATGGAAGTTAAAGAATCATGAAACTGCCTCAGGTTGGAGTCTGTTCTAGTTCCATCTGTTGTCTGTAGCATAACAATTCTGGGTCTTTCAGAAGAAGAAATATATTCTCTTCTGTAGGCAAGCGTAGGACAATTTTCTCTCCTGCTCTTTCTCACATGTGCACCAGACTGTCCTGATCCCTAATGGAGACTGCTATAAGGACCAGAACATGAGTTAATGTAGTTCCCGTTGTGTTTGTGTACATCAACTAATAGAAAAGATAGGTACACAGTGCAAGAGCCAGCACTTCCCAGTGAGTAGCTTTGGGCTCTTCGGTAGCTCCTGTATGGGCTGTTGGGTTGTCCTCACTTTGCACCCTGATACCTGCTGGCTGTCACCCAGCAGGAAAAAGAGAGGAACAAATCAATCTTCTGTCCCTGGTTTTTGGATGGCAGAGGGTTTGTAGACTTCTTGTCTTGTCCAGAAGAGGATTAGGAATGGGAATCCAGGAGTGGGGCAGTAGTGTTCACATTCACAGGCTTTACTCTAAACATTTTCTTTAAAGCAACAAACAAATTACTAAATAATCATAAACATAGATACGGTTATCTTACAATTCCTTAGCTCTGGCTAACTGTCCAATGCTATGAGTATGAAATGCAAACCTTCCCTGTACCCTCTAAAGAAAGTACCATGGAAATTTTTCTCTTCCTGGCAAAATTTTTGGCTTTTCTCTTCTTCACATAGTTTTGATTATTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTACAGAATTAGTGGTGCTATTAAACAATAATCAAACTGTGATCTTCGTTCCTGTGGTAGAAACAAAATCTTTGGGAAAGGCTACTCTGAAGTTATTAAGAGAAGTGACTGTAGCAACTGGTGGAGTGAATTTGGAGAATCCCAGCTGATGAGAACCTGTCTTTTCCATTGCAG
Seq C2 exon
GAAAAAGAAGATCACTTTGAATCTGTTCAGCTGAAATCTTCAAGATCCCAGAATATATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606:ENSGALT00000010664:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]