GgaINT0114276 @ galGal4
Intron Retention
Gene
ENSGALG00000011992 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr1:49655690-49657272:-
Coord C1 exon
chr1:49657154-49657272
Coord A exon
chr1:49655930-49657153
Coord C2 exon
chr1:49655690-49655929
Length
1224 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TTGCTATGCTACTCTTTCAGGAT
3' ss Score
9.21
Exon sequences
Seq C1 exon
TTTTCAAGCCAGAAGAGTTGCGGCAGGCACTTATGCCAACACTGGAGGCACTTTACCGTCAGGACCCAGAGTCTCTTCCATTTCGGCAGCCTGTGGATCCCCAGCTACTAGGAATTCCT
Seq A exon
GTGAGTGTCTTAGCAAGATACTTTCCTGGCTTTAACTCAGAACATCTACTTGAGACCAACTGGAGTCTGTCTTGCTTCCATTTCTGTGTTGATGCATTTGAAGAGGTTTGACTTAGACAGTGGAACATAGGATGTTTGAGTTAAGAAAATGTGCTTTTTCAAAGGTTTGTTCAGTTCTGTGTACATTTTGATAGATAAGCACACGTACTACTCATTGAGGTGACTGCTAACATCCCACTGTTTTGGGGGCCTTTTGTAGATCTTCATTCGTATTAAGATACTTCTATAGACGAGAAACACCTATGAAATGCAACGTATGTAAATATGCAGAAAACTGTTGATGTAAAAACTTAAGTAGATCAAGACCACTTCAAAAAATAAAAATACTCACTGATTAAGCTTTCATTAGCAAAAAGGAGGCTACTCAACTTCTTGTTTGTGTTGAATTGTGCACTTGCTTTAGAGTTGTCTTTGGCAGACATTACTATCCTGCAAGGGTCTATGTTTTAAACCACCTTATTGACCACACTTGCATTTTTTTATACACCTATGCGTACATAGTCCTGTTTAAATGCTTTGAGTGACATTTTTTGTCTGAAATATTTTCATTTGGCTCCGTTGGTTTTCACTGCTTTTTTTGAACTGCAAAAATGCAAGGCCTTCTGTATTAGAAGCAGGTGTAGGTGTTTCTCATGTTCTTAAACAAGCTCTCAACTGGTTGTTGTATTTGGAGGACTTTCTTAAGCGAAGTGATCAGATAATTGATGAGGGAGATTGGAAGAAGACTTTTAAATGGAAGATGTATAGGAAGAAACATGGAATCTTTTATCATATAGTACATATATTGGGTTTTGTTATTTGGTCTACTAAGTGCAGTTCGTCCTACTAATGTTCTTATATGTGTCCTTGGATCACAGCAGCTGCAAAAGTACTGCCATTTCCTTCTTTCTGTAGTACTTATTTTGCAGACTAAAATTAGTGTTTTACTTCACTGATAATAGATGGCTGATAGAACCTGAGAAATACAGGAATAATTAAAAGGATGCACGGGGGAGTTATACAGAATTAGAGACTTCAGTGCACGTCACAGGGAGCTTGACAGTCAAGTCAGGGAGGAACCTGTTTTTCTTGATGTATTGCAGAAGGATGTATGTGCTGAGAATGCATATGCTGTCATTTCACAACGTAGTTCTATAGCAGTATTTTGCTATGCTACTCTTTCAG
Seq C2 exon
GATTATTTTGACATAGTGAAGAATCCCATGGACCTTTCTACTATCAAGAGGAAGTTAGACACAGGGCAATATCAAGAACCATGGCAATATGTAGATGACATCTGGCTCATGTTCAATAATGCCTGGCTCTACAACCGCAAAACATCCCGGGTATATAAGTACTGCTCAAAACTGGCCGAGGTGTTTGAGCAAGAAATTGACCCAGTTATGCAGAGCCTTGGTTACTGCTGTGGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992:ENSGALT00000019563:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(33.3=72.5)
A:
NA
C2:
PF0043920=Bromodomain=PD(64.4=70.0),PF060018=DUF902=PU(28.6=15.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGCCAGAAGAGTTGCGG
R:
GCAGTAACCAAGGCTCTGCAT
Band lengths:
345-1569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]