GgaINT0116405 @ galGal3
Intron Retention
Gene
ENSGALG00000016721 | Q5ZIV4_CHICK
Description
NA
Coordinates
chr1:134193675-134196434:-
Coord C1 exon
chr1:134196298-134196434
Coord A exon
chr1:134193804-134196297
Coord C2 exon
chr1:134193675-134193803
Length
2494 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TCTTCTGTTTAACTATCCAGGTG
3' ss Score
8.88
Exon sequences
Seq C1 exon
GGAGTCATGACACTATGACCTACTGCTTGGATAAGAACTCTGCTGTTAGTGGCAATGAATCCAAGCTGGTGAAGTTTTTAAATAAATGTATGCCCTGCATTGTACGCCCTATTATTATGAAGTGGTCCATAACACAG
Seq A exon
GTAAATGTCTGATGTCCTCAAGCCTGGACGCATTTGAAGGTTGTGCTCAAGTGCAAAATATGCTCGTGTTCTCCCATAAGGCAATAAGAAAACAGCCACCAGCTGTCATGAAGTACCAGTGCTGTGCATACCGGATCTTCATTTGTAGGGAGAAGTCATTCAGCTTGGACAGGAAGGATTCACAACAATGCTGCTTAAAACTGACTACTAGAAACTCATCTTCCTTACAGTTTTATTATTGTTATTATTAGCATTTAATATTACCCTAATCAAAATGAGTTAGTAGAAGGGTTTTTCTTTTCTTGCACCTAATTCAGAAAGCAACGTCGTTTTATTGTCACTGTTGTGTGAGGAGCCCGTCGTTTTGCACTGCTTTATTGTGTAAATATTTCAGCGACCTGCAAAGGCAAAAATATCATTTAAGGGAACTTTAAAGATTAAGAGAGTGAAGGTGTGACACTTCACTTAAGGTTTAGTTCATATTTACAAAACAACTGAATTTTAAGCTAGCAGTTATCTCCTGCTGTTCCTCACAAACGTATGTTAAAGATGAAATTGGGGATCATAGTTTAAGTTAGTGCTTTTGAAGATTTTTCTAAAGAATGGACTTTCATGTCATCAAAGAGGCACCAGAAATCTCTTCACTTTCATTCTTTTTGAAGGAGTAGTTCATTAGTAGTGACTTAAAACTGAATAATTGAGACGTGGCAATAATTATGCTTAGGCTTCTTCACTTATCGCAGGGTCTTTTCTCGAACACTTATTTTAAACTTTGGAGCTCATGCCAATAATGGGTTCAGATACCTCCTTGCCTGCCAGTTGCTGGTGGACAAGGTGCTCTTGATGGAGATAAACAAGCTCCATGCATCATTACAGTCACTTTCTGGTTGGAGCCCAGCTTGCTGAGTGGGAGGTGGCCTGGCAGATGGGGAAGACCTGGCTGCAGGCCTGTCCTCTTTAGGGCCATGATGCGTGGCTGTCTCTGCAGGAAGGTGACTCTGTCCCTTGGTATCTGGAGCAGTGATCGAGGCATCCTGCTGCTGGCAGGATCCACGCGCTCCTGGATGGCCCTATGCCAGGTCCCAGCCCTGGCTGTTATGTGTGTCAACCTGGAGGCCCATATCTTTCCTATGCAATGGCTGACGTCAGCTCTCAACCTGGATGTCAGGTGTGAGACAGCTGTGCTGAGTCGCACTGCTTCCCTAAATCTCCTCTTTTTGCACTTGGAGGCAATAGCTGTGCTGTCTGATTTAGTATCCAAATCCAGGTGACTAATTAAGAAGACTAATCTCTCTAGTTTTCTCAGGCAGTTGATAGAAAGAAAGAAATTTGTCTAAAGGGCAGTTCACAACAACTAATCAGTCTGGTGCACTTTCTGGCCACAGTGGTTACATATGACCTACAGCCATACATTTTCTGCATCCCATGTGGAAGCCAGTCTTGGGCATGGATCACTCCTTTGGCTTCTGCAGCCTGGAGGAGACCCAACAGGTGTGGAGGATGCTGCTGGCAGCTCCTGTGATCCTCAGCACCTGAGGGCATGTGCAGCTCAGATTGAACTCCCCTCTTAGGAGCAGAAAGGTAGATGGTTAGAGCTAGGCAGGGTGAACATCCTGCCAGATGTCTTGAGTTCTGTCCTGGCACTAAGAAGTGTGGTTATCATGCACAACACCTTGCACTGGTTTAGCTTTAGTTGAATCCTATCTGACTTAAATTAGTACAGTCTGTTTTTTTTCTCTGAAACCTAATAGTGTTGTCCATACAAGCAGGTTGAACTGAGACAAATTAGGATTTAAATGTGTTAAATTCAATTGATTATGCTCTCTTAGTGAAAGAGAACCTTGATAAATATAGGAGATGCGTCATTTGGGATGTTTTGCCCCAGACTCATCTCTATCACCTGTCCCATGTAATTCTCAAAGCCAGATGCAGAGGTTCAAGAGAAATCCAAGACAGGAGAGGGCCTGTATTTTGTAGGACTTCTGCAAGTTAATTCAAACTTTTGAAGAGACTTTATCCTAAAAAGAGAACAATAGCCAGCACTTTTTTCTATTTTTGTTTTTCCTTCCACTGAGGATGAGTGAGGTCCTTAGAGACAACCATGGTAAAGTCTTTGATCTAATAAAATAAATACAGAATTTCTGAGGTGCTGATCCTGCAAGATTTGTTCATACAAATAGTCTTGTGAACAGAGATTGTGTTTCTATTTAGGCGCGGGTTAATGGATCTTTTAACTTTGAGAAGACAACAAATGCAGAGGTCTGAAACTAATCTAGCCTATATCTGGAGTATATTCCACAGGGAAATCAGGATCCTCTTGTTAGATAGTAAAATAATTTAAAGTTATGATTTGGTGCCTTACCGTGCCATTTTAAAGGAGAAAGGTGTGGAAATTGTCTTAGGGCTAATTTGGTACACCTCTTCCAGTTATCTAATCTAAAGGAACAAACCCTTTTCAAACTCTCAGGACTCTCTCTTCTGTTTAACTATCCAG
Seq C2 exon
GTGCTAACTGTGACGGAGCAACTTGAGGCCGGAGTTAGATATTTGGATTTTAGGATTGCCCACAAGTCTAGCGATCCATCTACGAATCTGTACTTCGTGCATATGGTATACACAACCGTTATTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016721:ENSGALT00000026985:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PU(6.9=19.6)
A:
NA
C2:
PF0038814=PI-PLC-X=FE(32.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]