HsaINT1027308 @ hg38
Intron Retention
Gene
ENSG00000182378 | PLCXD1
Description
phosphatidylinositol specific phospholipase C X domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23148]
Coordinates
chrX:288733-290776:+
Coord C1 exon
chrX:288733-288869
Coord A exon
chrX:288870-290647
Coord C2 exon
chrX:290648-290776
Length
1778 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
ACAGCAGCCTCTGTCCACAGGCA
3' ss Score
7.01
Exon sequences
Seq C1 exon
GGAGCCACGACACGATGACGTACTGCCTGAACAAGAAGTCCCCCATTTCGCACGAGGAGTCCCGGCTGCTGCAGCTGCTGAACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAAATGGTCCGTCACCCAG
Seq A exon
GTACGGTCTGTGCCCCGTGCTGCTGACCTGGCCTGTCAGCTATGTGGGGCCCACGGCCCCGTGGTGCTGAAATGGCCCCTCACCCAGGTAGGGTTTGAGTGGTGCCCTGTGGGCTCAGGAGGCAGGTTCCTATCCCAGCTGCGGAGACAGGATTAAAACAAAACCTGCTGCCCACCCAGAACCCCTCCCCAGAGGTGGAAGAGAGGGGAACAGTGTTTTTATTTATTTATTTTTTGAGACAGGGTCTCACTCTTCTTACCCGGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCGCTGCCTGGGTTCAAGCGATTCTCCTGCCTCATCCTCCTAAGTACCTGGGTCTACAGGCACCTGTCACCACACCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTTACCGTGTTAGTCAGGATGGTCTTGATCTCCTGACCTCATGATCTGCCCGCCCCAGCCTCCGAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCAGCATTTTATTAAATGGCGTAAAGCTAATGCCGTGAGCATCGCAGGCCTCCACTGAGAGCTGCAGAGGGAGAGGGTCTCGCCCTGTTGCATCCCAGCAGAGACAACACCTTTCTTTTTCTTTCTTTTTCTTTTTTTTTTTTTTGAGACGGAGTCTCACTGCCGCCCAGGCTGGAGTGCAGTTGGTGCCATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGACTACAGGCTCCCGCGACCACGCCCGGCTAATTTTTGGTATTTTGAGTAGAGTCAGGGTTTCACTGTGTTAGCCAGGATGGTCTCGAACTCCTGACCTCGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTCAGCCACCGCGCCCGGCCGAGACAACCCCTTTCATGCCTGCACTCAAGACAGACAAGGACTCATTTCTCGTGTCTTTAGGACCTGAGGCGGGTCTGCAGTTTGCAGTCAGGCATCTGCTAGTCCCTGGGAAACAGGGAGACAGGCCCCTTTCTCCCTAATAATCACATTCATTCATTCCTTTAGAGATGGAGTCTCGCTCTCTCACCCAGACTGGAGTGCGGTGGTGCGATCTCAGCTTCCTGCAGCCTGGGCCTCCCAGGATCAAAGGATCCTCCTTCCTCAGCCTCCCGGGCAGCTGGGACTACAGGTGTACACCACCACACCCAGGCTGATTTTTAAAATTTTTAGTAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACGAGGTCAGGAGATCGAGACCGTCCTGGCTAACATGTTGAAACCACATCTCTACTAAAAATACAAAACAAAATTAGCTGGGCGCGGTGGCGGGCGCCTGCAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAACGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCCAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGGCCAGGTCCCCGGAGATGAGGTTTTCCAAATGCAGGTCCCCGTGGCTGCAGCGCTCCCAGCACATACAAACAGCTGTTGTTACGACATCCACGTCCCAGTGGGCAGCAGGACATGCGGGTGGGCCAACCCCACAGCCCATTCCTGAGCCCCCCAGACGCGGCGCTCAGCCAGGCAGACATGACAGCAGCCTCTGTCCACAG
Seq C2 exon
GCACTGGACGTCACAGAGCAGCTGGATGCCGGGGTGCGGTACCTGGACCTGCGGATAGCCCACATGCTGGAGGGCTCGGAGAAGAACCTGCACTTTGTCCATATGGTGTACACAACGGCGCTGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182378:ENST00000399012:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(26.6=100)
A:
NA
C2:
PF0038814=PI-PLC-X=FE(24.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCACGACACGATGACG
R:
CACCAGCGCCGTTGTGTAC
Band lengths:
262-2040
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains