GgaINT0116827 @ galGal3
Intron Retention
Gene
ENSGALG00000015842 | TIAM1
Description
NA
Coordinates
chr1:107923582-107924722:-
Coord C1 exon
chr1:107924664-107924722
Coord A exon
chr1:107923685-107924663
Coord C2 exon
chr1:107923582-107923684
Length
979 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
GTGTTCTGAAATTCTCCCAGGGA
3' ss Score
7.38
Exon sequences
Seq C1 exon
TGTTCAAAACTGCTGTGGTCCTTGTGTACAAGGATGGTTCCAAACAGAAGAAGAAACTT
Seq A exon
GTAAGTTGTGTGGACCATTTCTGTGCCACTGCGTACATTTGTAGTAGTTCAGTAATACAGATTTGCCTTCCATAAAGCTGTGCTGCCCGTGTGTGCTTTTGCGTATGTGATCTTTGTTTACCACCATGCAAACGAGGATGTGAGGAATTCTGAGTGGCATTCCATTCAGCCTGAAGCCAGTGCTTTGCAAATGTTTGTTTAATTTATACTTTACTCTCTGCTGGGCTCTTCATGTTGCTTACCACATCCATTCCATGCTGTGGAGTGGACTTTCATGGAACAAGGTACCATGCTGAGTGCGTCTCTTGTGTTTGGCTCTTCAGTCAGTGTATACGAATCAAATATGAGAGCTGTCTGTCAACTTTCTTAGTGAGACACAATGCCTTTGCATCAGTCCTGGCTGTTAGTTTCTGCACGTTTAATATGCCACTGAGCAAGTGCTGGCTGCTCTTGGCAAATAAGGTGTGCCAGCACTACGTATCAGCGGATCCTTCTGGAGTCAGAATTGGAATTCAAAGCTATACTTCACAGTGAACACGTGACTTACTGCAAAAGGAAACATATTTTATAATATTATAGGAAACACTTTGATTCCCATATACAGCATAAACCAAAAGTGTGATCTGAAATGCTTGTCTTCTAAGTCAACTGGACACAGAATGATTTTGGAGTGACTAAAGCAAGATCAGTGCAGGTTCATGAGTGTATGTGCAACGGGAAGTGTGAGTGTAGGATTAGTCTTAAATGATTTTTGAAGGCATTGACAAGAGTTCATTGGTCTAATGGTTGCATTGGTCCAGAATTTAACAAGACTTTTGTAGATAGGCACTTCAGTGTTGCTAGTTACTAAGGTGATGTAGAGAAAAAAGAACTGCAACAAGTCTCTAGCTGGACATTTTCAGTGCATAGCAATGATAACTGTGATATCTGAATATCCCAAGGTATCTCATTTCTTAACGGTGTTCTGAAATTCTCCCAG
Seq C2 exon
GGAGGATCACATAGAGCTTCAATTTATGAAGACTGGGATCCATTCCGCTTTCGTCACATGATACCTTTGGAAGCACTGCAGGTTCGAGCATTGGCAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842:ENSGALT00000025542:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(14.4=100)
A:
NA
C2:
PF0016924=PH=FE(25.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]