RnoINT0150918 @ rn6
Intron Retention
Gene
ENSRNOG00000021569 | Tiam1
Description
T-cell lymphoma invasion and metastasis 1 [Source:RGD Symbol;Acc:1307455]
Coordinates
chr11:29942238-29942831:-
Coord C1 exon
chr11:29942773-29942831
Coord A exon
chr11:29942341-29942772
Coord C2 exon
chr11:29942238-29942340
Length
432 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
CGGACTGCTTCTCCCCGCAGGTT
3' ss Score
12.07
Exon sequences
Seq C1 exon
TCTTCAAAACTGCCGTGGTCCTTGTGTATAAAGATGGTTCCAAGCAGAAGAAGAAGCTC
Seq A exon
GTAAGTGTCCTCCCTTCCTCCTGGAGTTTCCAAGTGTCCCTGTTGTACCCTCATAAGTCAAAGCCTCCCGTTTCCCCTAAGCCCTCGGCGGGGGGGAGGGGGGGGGACAACCCAGGTCTGCTTCCTTCGTTCAGATGCCTGTGGAGCACGTGAGCGGATAGGTACAGAGCCTCCCTGTGGCCTAACTCCTTTTGCCTTTCTCTCTTGTGCTCCTTCTTGTGTGGGGTTTATTTTCTCTTGTCTCTTTCCCTGCCTCTTTCCTCTGCATTTAATTAACAAGGCTACTTACACAGCATCCCAGGGAAAGCAAGTGTATATGATGCTCCTGTAGCTTGCTCTGAGATCCCGAATCTGCCACAGATGTGGAAAGTGTGGGGAGCCGGTCCTGGCAGATGGCCTTGCCCTTGAAACACGGACTGCTTCTCCCCGCAG
Seq C2 exon
GTTGGCTCTCACAGGCTGTCAATCTACGAGGAGTGGGACCCTTTCCGGTTTCGCCACATGATCCCTACCGAAGCTTTGCAAGTCCGAGCTCTGCCCAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021569:ENSRNOT00000046486:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(14.3=100)
A:
NA
C2:
PF0016924=PH=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]