GgaINT0117860 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79273140-79275450:+
Coord C1 exon
chr1:79273140-79273242
Coord A exon
chr1:79273243-79275408
Coord C2 exon
chr1:79275409-79275450
Length
2166 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CATTCTCCTTCCTCCTACAGATG
3' ss Score
12.52
Exon sequences
Seq C1 exon
CTGGATAAGACTTCTCTGAATCTTAACATATCAGTGGAGCAAGATAATGAAGTACAGATCCTGAAACCAGCCACAGTGCATGTCTATGACTACTATAAACCAG
Seq A exon
GTGAGATTTCACAGACATAGGTGAAGAATCACTATCTTACCTCCCACCCAAACACAGTGCAGTTTATGTCATTTGTTCCACTTATGTCCCTTAGTCCAGTGTACTCCTTCAACTTCAAGCTTGGGTTTCCTCTGTACAGAACTTCTACATTTAAGTTTCAGAGTCACTTTCTTTTCTGTTCCTTGAAGTGAGACTGCTGGACACTGAGATTATGTTTCAGGGTGGATATTCAAAATGACTGATTTTTTAAAAATTGTTCTAACTTCAAGCTAGGTCTCTGGAAAGAAAGCTTCTCTGTCAATTTACCATGTCTTCTTCCACTCCTTAGCTCTCTTGAAAATATTTAGACATTTATTTAAAATCAGTGTTACATACTGCCGCCTTAATTGATCAGAAGGCAGAATTAAGTTCTATGCTTTTCAGGTATAGTGTAACAGTCCAGCCATCCAGTAGGTGCTGTCATGTCCCAGAGCATAACAGGAAAATAATTTCTTAGCCTGTTACCTTAAGACTCAAATTGGAGTTTTAGAAAGCAGGCATTATTTATTTTTGGCACTTGACGCATGGTGGATCATCTCTGCCTACCATGCATGTCTTGTACAAAGTATCTTCAGCCTATAGATATTACTTGTGTTACATATGCAAATGTTTTCCCATGCAGTACATATGTATTCAATACTTCAATACTTCAATAGGATTCTACCTCCTTGCACATGATGAGACTTTTGTGGTGGTGGTCTTTTGGTTCTCTGGCCACCGTCAGTAGTCTTCTTCATTGTGTCCACTGGTTGAACCTGGTTTTCACTCATGCTCAGTTAGCTTCTCACCTTGATTACACAATACTTTCACAATAGTTTCACAAAACTATCATCTGATTCAAAGAAGAACTTCCCTTATCTACTTGGTACAAAGAACAGACTCTTCCCCTTGTCTAAACAAACTACAGGGCTACCCATTAACGAGCGTTAGCAAGATTAACAATATCACTACAACTTGTATCAGTTCCCTAAAGCTCTAAATGAACTATTAGCCCAGAGATCTTGAAGTCATTCTCGGCCTCTACCTCTCCACGCTCAGTATGAGACAGCACACAGAATAACAAGAATTATTTGAAAAAAATTTGAGAGCAATATGCAAAAGTACCACTGGAGATTTAGAAAGCTGAACCATAGGTCTACATGTTGTATACTGAATTCCATTCTTCCTCTCCCTTCCCATATCATTTCAAGAAGAAGAGGAGGATTCTTAATTCAATCTTTGTAGAGATAAGTACTGTAACCTAGTATGCTCTCTCTTTGCTGTCTCATCCTCTACCATAATTTTTGTGCTTGTTATAAGATGGGAATATACTGATTATCAATAAAAAAACAAGGCTACTGGGAAAACCTACCGAAAGGTTTTCTGTTTTAAAAACATCCTTCTGTTATGTAAGTCACTCTGAAAGTAATGCCTCCTATATATATCCATAGAAACTAAAACAAAGAGAACAATACTACTGTTTGATAGAGCAAATCCTTAGCCACAAAACATCATTTTTCAACATAGTTACCACTATTAGCTGTGCATTTTTCCAGTAATGAACAAGAGCCTGCATGCCACACTCATAAAAAACTGCACCAGCAGAGGTGAATTACTGTCGTTGTCCCCACTGTTGAAATACATCACTCACCACCTCACTGTGCTAACATCCGCTGTTTGGTCTCCATAACCATTCAACAAGTGTCAATGAATATCAATGAGTGCAATTTTTTCTAAATGGAGAAATCAATTCCACACCTTTTCTTTATATGCACTTCAGTGTCAGATGCCATTTTGTCAGACTGCCCCTCTACTGCGCCTCTGTCTCGTTGCAACAAAATGTAACAGAATATTGGCAGCAAGGTTCAACCTCAACTGTCATACCATCACCATCTGCCTCTGACATTGTGGCCCAACATAATAAAATAGGTGGCATTATTTGTGGATTATCACACTGCATAATAGGATCTTTTATAGCTGGAGTGGAGACAAATAAAGGAAAATTCTAGACATTTTTCTGTTCCTATATTCACACCCTAAAGAGGGGAAAATAAGGAGAGTGGGATGGTAGTGTTAAAGAGAAAGAAGCTTGGCTTTATTTTACCATGTAATTCTGCAGCTCACCATGCATTCTCCTTCCTCCTACAG
Seq C2 exon
ATGACCGTACAGCAAGAGAATACAATTCCCCTTGCAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252:ENSGALT00000023051:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.6=100)
A:
NA
C2:
PF076779=A2M_recep=PD(8.0=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]