GgaINT0117947 @ galGal4
Intron Retention
Gene
ENSGALG00000011894 | CYP2D6
Description
cytochrome P450 2D3-like [Source:RefSeq peptide;Acc:NP_001182486]
Coordinates
chr1:49264035-49266784:+
Coord C1 exon
chr1:49264035-49265124
Coord A exon
chr1:49265125-49266612
Coord C2 exon
chr1:49266613-49266784
Length
1488 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTTTGTTTTTATCTGGGTAGTTT
3' ss Score
6.54
Exon sequences
Seq C1 exon
CTAATAGCAGTGATGCCAAGAGCACAGCGCTGTGCTGTGTTAGGAAATACACAGGCTATCTCCATAATTGTGTTTTGATTACTGCTGTCCCAAAGGCTGGAAATGCAAGGCTGCTTGTAAGCATGTGCTTTCTCCCCAGTAATTGAGATGTGTTCTACAAAAATCAAGGTCATTGCACCGACTGACATAAAGGGTTGAACAAAGATTGCTATTCCCAGAGCTGTAAGTGATTTTTAAAGTCTCAGGCCACTGTATTAAGGTTACTTCTGTGAAGTAAGTGCTTTCTATAAGGAAAGGTGTGACCTAACCAAAGCTTTCAGAAGTTCCAGTGGAATAAATTCTCAGCCCTGCAGAAATCTGAACAGCCCATGTTTAGGTTGTGCATTTCCCCTGACTTGTCTGTATGAACAGTAAGACAACAGACTTAAAATCTTTCAAAACCTCCCATGTGTATGCAGCAGGACTGGACTGCTTTGTGCACTGCAATCCCACCTTGGCTGTGGAACAGGGCAGGCAAGCACCTGGCCATCATCCAGTCCTACCCAAAGACAGCACAGCTGCCTCTGTTGCCATGGTGGCAGGGACAAGGAGGTCTCAGATCCGAATTTGGCAAAGAGGTGGAGGAGGAAAAGGATTGGCCCTCATCACCACTCCCCCAACGCTGAGCTGAAAGGAGGAGGAGCTCTGGATCCATGCCAAATTCCATGTTTAAAAGTCAGCAACAACAGGGAGAGGGGAGCAGGAGGCAGAAAAAGAAGACGTGAGGAAGAGGAGGAAGCAAGAGAAAGAGGGCAGCTGCCCGGGGAGGGGAGCAGGAGAAAGGAGGCAGAAGCGAAGGACAGAAACAGTGCTGAGTCAAAACAGGAAGACCAAGGAGTAGACAAACTACAAAATGACACTGCTCCTGTGGCTGTCATCTTGGAGCAACATCTCTGTACTGGGAGTTTTTCTTACTGTCTTTACCATACTTGTTGATTTCATGAAGCGCAGAAAGAAGTGGAGCCGTTACCCCCCAGGCCCAATGCCACTGCCGTTTGTTGGGACCATGCCATACGTTAATTACTACAACCCGCATCTCTCCTTCGAGAAG
Seq A exon
GTGAGTAGTGGACCCTGCCAACACGTATAGCAGTCTGAGGGCTGGGGAAGTGTTACAGGAATGGCAGACTGCTCTGTGAGTTATCCAGCATGCCTACAGCCATGTTGCAGTTTCTGTTAAAGACAGCTTGCAGGATTTGCCCCAGCAGTGGTGCCCAAAATGCCTGTAGCAATCCTATTCAAAGTCAGGCATTATCTCTTTTCAAAGGAAAAGCACAGCACAGCTTGCAGCAGATCAGCCATGGGCTTTTCCTTGAGTGTGCAAAATCTAAAGGCCCCTTCTCTAAGACAAAACTTTTTAGCTGTCTGTCCAAAACCTGCCAAATGGAAAAACTAAATATAGCATTTGCACTGTTAACCTGCATAGTGTCCAAAAGATTACCATTTTCAAATCCTATCAAATCAGGGCCATTCTCACTGCACTGATTGCTGGTTACTTGACCACTAATTGATTTTAATGATGTATTTCTAGTGTCACTGAAGTACTAATCCCCTTTCAAATCCCATAGCAAAAAAAAAAAAAAAAAAAAAAGGATGAAGAGGGGAAAGGGGCAGATGGATGGGAAGAGGGAGATAGGAAGAAATGGGGGAAGGGGGAGAGAGAGAGAAAAAAGGAGAGAAGGGAGTAAAGGGGGAAGGAAAGGAGGGAAGAGGGAAAGAGGGGAAGAGAGGGGAAGAAATGCAAGGAGAAAAGCAAGGCACAGCAAGGAAAGAAAAAGACAGTGAAAAACACATAGGGAGAGAGAGGGAAAGAACAAAATGAAGAAAGGAAGGAAAGAATACAAAGACAAAAGACAACAAAGACAAAGAACATACAGCTGATAAACTCATCTATGCAATCACCGTTTTGTCAGTAACATGTCTTTTACAGATCATCAGAGAGGTAGGATGTATGCCAGTTAGCAGTCTTCCTAGGAGAGTACGTTCCCCCTGGGGAGAAAGCTGACCTGGAACTCCAGTGTGGAGCTACCTTTTCCAAGCATGCTTCTGGAAATTGGGCTTTGGGTAGAAAAAGAAATTACATACCACTTTATTATCAGTATTTCTGTCTAGCAGAAATTAAAACTACCTCAAAAATTGCTTAGGTTTTCAAATGAAATTACAAGTATCGGGAAACAATGTGTTCCAGAGTGTGCAGTCTTTGAAAATCTCTATACTGGTTCTTGACCTAGTGTTGTCAGACAAAATCCAAAATAGCCACACAATGCTCTGGACAAGTTTCATCAGAATAGTTGTATATTAAATCTTGCCAGCTGCAGTGCATTGCTTCCTGCTTCACATAGGGGATGACACTGCTCCGAGCTGTTGCACTGCAGAGACAATCAATGGTCAAAGGTCAGCTGGAAGTTCTAATAAAACAGTACAAACCACTGAACAGTCAGGTCCTAAGGAAAGATACAGGGATATGTTTTTGACATTACGTTCCTGTACTATTGCGTGTTTTCAGGGCCATGTTTTTTTGTTTGTTTGTTTGTTTTTATCTGGGTAG
Seq C2 exon
TTTCGCAAGAAGTTTGGAAACATTTTCAGTCTCCAGAACTGCTGGACCAATGTGGTAGTGCTGAATGGGTACAAAACTGTGAAGGAAGCCCTGGTCAACAAATCAGAGGACTTTGCTGACCGGCCATACATGCCAGTATATGAACATCTGGGCTATGGACATAAATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894:ENSGALT00000019412:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=39.4)
A:
NA
C2:
PF0006717=p450=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAGGACAGAAACAGTGCT
R:
GTTGACCAGGGCTTCCTTCAC
Band lengths:
358-1846
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]