RnoINT0044341 @ rn6
Intron Retention
Gene
ENSRNOG00000008988 | Cyp2d2
Description
cytochrome P450, family 2, subfamily d, polypeptide 2 [Source:RGD Symbol;Acc:2471]
Coordinates
chr7:123654817-123655896:-
Coord C1 exon
chr7:123655608-123655896
Coord A exon
chr7:123654989-123655607
Coord C2 exon
chr7:123654817-123654988
Length
619 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TACTCTGTCCCCTATTTCAGCTT
3' ss Score
9.81
Exon sequences
Seq C1 exon
TTTAAGGGACCAGGTTCCCAGTCTGTTGTAAGAGGATCTTTCCTGATTCTAAGTGTCTGGACAAGTATTCCTTCAAAAGCCTGCAAGCCGTGGGGCAGCCATGGGGCTGCTGATTGGAGATGACCTCTGGGCTGTGGTCATATTCACAGCCATCTTCTTGCTTCTGGTGGACCTGGTGCACCGGCACAAATTCTGGACTGCCCACTACCCTCCCGGCCCTGTGCCACTCCCTGGGCTGGGAAACCTGCTGCAGGTGGACTTTGAGAACATGCCATATAGCTTATACAAG
Seq A exon
GTAAGAAAGGTGGTGGTGGAGTACAGTAGAGGTCAGAATGCCCCAGGTAGCATGTGGTGTTGCTGAAGGTAAAGAAAAGACAGGAAGATGGCCCCCAAGAGGAAAAAGTGTTGTTGGGAAAACAAAGTGGTGAGAGGGGCCAGCTGTGCTATAGTCTCTTTCTGCTGTGTGGTCTCAGGCCTGGATTCCCATCTCAGAAACCTGAATTTCCTCTGGTATGGTGGAGTAGGAAGGGACCCAAGGACCTTACTCAGGCTGGGTCTCTGCTGAATGATAATATTTGCTATGAGTCCTTTGCAGAGTTGAGAAGATATGATTGCCAAGCTACAAGGTGACCCAACCACAGGCTGGGGATGTAAGTCTGTGATAGAGCATTTGCCCAGCATATGTAGGAACAAGGTTCAATAAGTACCATCATATACTTGCACACACACACACACACACACACACACACACACAGAGTTAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGGGGTCAGGGACAAAGACTTGTGTGAGGAACGTTGATCTTCTGCTAGGGAACATTACTACCTATGTACTCTGTCCCCTATTTCAG
Seq C2 exon
CTTCGAAGCCGCTATGGTGACGTGTTCAGCCTACAGATAGCCTGGAAGCCTGTAGTTGTGATCAACGGGCTGAAGGCCGTGCGGGAACTGCTGGTGACCTATGGAGAGGACACTGCTGACCGCCCCCTACTGCCCATCTATAATCACCTGGGCTATGGGAACAAATCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008988:ENSRNOT00000012413:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.6=41.3)
A:
NA
C2:
PF0006717=p450=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTGATTGGAGATGACC
R:
TGTTCCCATAGCCCAGGTGAT
Band lengths:
348-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]