GgaINT0117949 @ galGal4
Intron Retention
Gene
ENSGALG00000011894 | CYP2D6
Description
cytochrome P450 2D3-like [Source:RefSeq peptide;Acc:NP_001182486]
Coordinates
chr1:49267478-49268962:+
Coord C1 exon
chr1:49267478-49267630
Coord A exon
chr1:49267631-49268801
Coord C2 exon
chr1:49268802-49268962
Length
1171 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
ATATCCATTTCCATTTTTAGGTC
3' ss Score
11.66
Exon sequences
Seq C1 exon
GGCTTGTTTTGGCAAGATATGGACATCTCTGGAAAGAGCTAAGGAAATTCACGCTCACTACCCTGAGGAATTTTGGGATGGGAAAGAAGTCCTTGGAAGAGCGAGTGACTGAGGAAGCAGGATTTTTGTGCTCTGCAATCAGTTCTGAAGGAG
Seq A exon
GTTTGTCACATGCAGCAGGATGGAGGAAATGTTTTGATAAAAAACCCAAACAATCAAACAGAAAAAGGCAACAGAGTGATACAGCTTCTCCTGTTTGCATGCTGTGTTTCAAGTCCATCAAAATAATGGTTACTGAACCTGTTCTGCTGTAAAGCCACTTCCACCTTATACACTGGGGCTACTGTAAGGCTAAACAATTTGAAACAGGAAATATATAGAAATAAGCAGAGGTAAAATATAATTATTTCCAGGACTGGGTAACTATTAGCTGTATGAAGTTAGTTGTAACAGGGTGGAACATGGTGGATCCACTTGTTGTCTCCCTCTACTCTGCCCTCGTGTGGCCCCATCTGGAATACTGCATACAGGGCTGGGGCTCCCAGCACAAGACAGAGATGTTGGAGCAGATCCAGAAGAGGCCATGAGGATGTTCACAGGGCTGGAGCACCGCTCCTACAAAGACAGGCTGAGGGAGCTGGGCTTGTTCAGCCCACAGAGGAGAAGGCTTCAGGAATACCTCATTGCAGCATACCAGTATTTGAGGGGAACTTACAATCAGGAAGGAGATTGATTTTTAACATGATTTGATGGCGAAACGACATGGGGAACAGTTTTAAAATGAAAGAGGGGAGAGGAGGAAATTCTTTACTCAGAGAGTAGTGAGGCACTGAAACAGGCTGCCCGGAGAAGCTGTGTCTCTGGAGGCACTCAAGGCCAAAGTGGATGGGGCCCTGGGCAGCCCAAGTGGTGGGTGGCAGCCCTCGTAACAGCTGGAGTTGGGACTCAGTGGGCTTTGAGGTAATTTCCTACCCAAACCATTCTATGATTCCATGAAATCACTATCATCATATATGGCAAAATGAATCTGACAGCTTTCACACCGCATCAACTATCATTAGACACAAGAAGAAGTGCTGTCATGTGACAAAACAACCCTGTAAGTCAGATTTTCTTGGGGACTTTTCTTCTTTAAACAATGACCAGTTGAACCATAGTAGGAGATGAGAAGATGTTCTATTCCTACTATGAAGTATTTCTAATTTCAGCACTTTGGGGGCTTTTTCTCTTGAAAGCAACAAAGAGGTATGTGCATATTCTTGTTGCTGGAAGCTGCAGCACCACAACGCGATGTTGCTTAGCCTCTTTTCTTGATATCCATTTCCATTTTTAG
Seq C2 exon
GTCATCCTTTTGATCCACGTTTTCTTGTAAATAATGCAGTCTGCAATGTGATCTGCACCATTACCTATGGAGAGCGTTTCGACTATGGAGACAAGACATTCAAGAAGCTGTTAACTTTGTTTGAAAACTCTCTAAATGAAGAAGCTGGATTCCTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894:ENSGALT00000019412:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.1=100)
A:
NA
C2:
PF0006717=p450=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGTTTTGGCAAGATATGGAC
R:
TGAGGCAGGAATCCAGCTTCT
Band lengths:
313-1484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]