MmuINT0044966 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr15:82470536-82470930:-
Coord C1 exon
chr15:82470778-82470930
Coord A exon
chr15:82470697-82470777
Coord C2 exon
chr15:82470536-82470696
Length
81 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
ACTTGCATCTCCACTCCTAGGGA
3' ss Score
7.93
Exon sequences
Seq C1 exon
GTGTGGTCTTTGCACCTTACGGGCCTGAATGGCGAGAACTGAGGAGATTCTCTGTGTCAACCCTGCGCAACTTGGGCCTGGGCAAGAAATCGCTGGAGCAGTGGGTGACAGAGGAAGCTGGCCACCTCTGTGATGCCTTCACCGCCCAGGCTG
Seq A exon
GTGGGTGATGTGTGTGGACTGCAAGTGGGGACAGGGAGACAGCAACAATATCCTGAATTTTACTTGCATCTCCACTCCTAG
Seq C2 exon
GGAGTCCCCTCGATCCTTACACACTCCTGAACAAAGCTGTGTGCAATGTGATTGCGTCTCTCATTTATGCCCGTCGCTTTGAGTATGGAGACCCTGACTTCATCAAGATGCTAAAAATATTGAAAGAAAACATGGGAGAGAATACTGGCTTGTTTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
-Cyp2d13:NR_003552:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAATGGCGAGAACTGAGG
R:
TGCACACAGCTTTGTTCAGGA
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: