GgaINT0119181 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90807260-90808089:-
Coord C1 exon
chr1:90807951-90808089
Coord A exon
chr1:90807379-90807950
Coord C2 exon
chr1:90807260-90807378
Length
572 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
ACTTTGTTTCTCTTGATCAGGTG
3' ss Score
9.95
Exon sequences
Seq C1 exon
CAAGCCATGGACATTTTAGGATTTGTGCCAGATGAGAAGTATGGTGCCTACAAGCTCACAGGTGCCATTATGCACTTTGGGAACATGAAATTCAAACAACGACCCAGAGAAGAGCAGGCAGAGGCTGATGGCACTGAAA
Seq A exon
GTAAGAATAACACCTAACATTACTCCTTACATTCAAAATCCTGGTATGTATCATACACTGTATTGAGAAACAAGCAGCCTGTTTCATTTTACCTTGCACAGTGTAGCCACTGTTCAGTCAAAAGTGCTGTTCTTTCATTTCTAGCAGTGGTTTGAACAGTGCCAAGTAACATTGCTTAGTAGAAGGTGTCAGTCAGTCAGACCAACGCAATAAACTCCATTTTGTAACCATTTGAACAAAATGATTGTACGAAGTTGTTGCCTTAGCTTTCTCTTTTACATCTTCAGGTCTTGTTTCTTTGCATCCTCCAGCACCTTGAATAGTATTGTTTCAACTGCCTATATCCATTGTGAAGATATGTTATTTTCCCTATACTGCAAGAATTTCTCAAGTGTGTTTCTAGCTGACCTCTGCCGTGGGGAAGAGCACAGGCACATTTAAGACAATGTATTACAAAATTAGCAAGGTCTTAGCTTCTCCTTGGAAGTGGATGCACTAAACATTTTTTCTTGGCTAGGTATGTTTTCATGTAGCAGCTCAGATCCAACTAAAACTTTGTTTCTCTTGATCAG
Seq C2 exon
GTGCCGACAAAGCTGCCTACCTAATGGGAATCAACTCCTCTGATTTGGTTAAGGGCTTATTACACCCTAGAGTGAAAGTTGGAAATGAGTATGTGACCAAAGGTCAAAGTGTTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGACATTTTAGGATTTGTGCC
R:
CTGTTCAACACTTTGACCTTTGGT
Band lengths:
254-826
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]