GgaINT0119191 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90797200-90797958:-
Coord C1 exon
chr1:90797822-90797958
Coord A exon
chr1:90797456-90797821
Coord C2 exon
chr1:90797200-90797455
Length
366 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TTGCTTTCTTCCTTAAACAGGGA
3' ss Score
10.25
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCTGGTCTGTTGGGCCACCTAGAAGAAATGAGGGATGAGAGACTTGCAAAGATCCTAACAATGATCCAGGCAAGGGCACGTGGCAGACTGATGAGGATCGAGTTCCAGAAGATAGTGGAGCGCAG
Seq A exon
GTATGAAGTCACTCCCTTCAATCTTAGCAGATAATAGTCATTAGCATTTAATTATATGTTGAGTAGAGCCATTATTACTGTCACTAAGGCTGTAGCTAATCCTAAATTAAAGGTTTAACATACATGTCTGATAAAACTAATAGCAAGTGTTTCTTGGTTACCTGAAAATGGGATTTGGAAATTTTTCATGTCCCTGAAAATCAAGAGCATGCAGGAAATGTTTTCTGTAATGTTGGAATTGAGAACAAGTTCCCAACATAACCAGGGAGCAGAGCTGTAAAACTGACTGAGAATGGAAACAAAAAAGTATCTCATTTTCTCAATTCATGCTAAGCATTAGGAGATTTTGCTTTCTTCCTTAAACAG
Seq C2 exon
GGATGCCCTTCTTGTAATTCAGTGGAATATCCGTGCCTTTATGGCTGTGAAGAATTGGCCCTGGATGAAGCTTTTCTTTAAGATCAAACCTCTTCTGAAGTCTGCAGAAACTGAAAAAGAGATGGCCAATATGAAGGAAGAGTTCTTGAAATTGAAGGAGGCCCTGGAAAAATCTGAAGCAAGGAGAAAGGAACTTGAAGAGAAACAAGTCTCTTTAGTTCAGGAAAAAAATGATTTGCTATTGCAGCTCCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.2=6.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.0=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTTCAAGGCTGGTCTGT
R:
TGTTTCTCTTCAAGTTCCTTTCTCCT
Band lengths:
344-710
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]