GgaINT0119208 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90778432-90779603:-
Coord C1 exon
chr1:90779499-90779603
Coord A exon
chr1:90778528-90779498
Coord C2 exon
chr1:90778432-90778527
Length
971 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
TTACTGGTGTTTTGGTACAGTCA
3' ss Score
5.71
Exon sequences
Seq C1 exon
GTTCGTGAGCTGGAGAATGAACTTGAGAATGAACTCCGCCGCAATTCAGATGCCCAAAAGGGAGCCCGCAAGTTTGAGAGGCGCATAAAGGAGCTGACTTATCAG
Seq A exon
GTGACCGTGGACTGCAAGGCCATTGGGCCTAGTGAAGAATAAAGGAGTGCATTATCTAGAGCTTTCTGATTGCAAGAAGCTTTATGGATGGGAAGAATATCTCTGTAGGGCTACGATCATCTTTGTAACTCATTGTAACTCATGTTAGGAAGGATGCTATTGCTGGGATTTGGATGGTTTTAGCATGGTTTTAAAATGGAGCAGGTTTAGATGATGATTTACATTGCAAGGGAAGAAAGCCCAGCTGTCTCTCAGCTGTGCTGATGTTGCAGAAGAGAGGATTCTGATGCATCACAGGGCATAGGGCTGCCCAGTCCCAGAGCTCTGACACTTACCACAGCTTTACTAACAGCTGCTCATGCTGCTTGCCTTTTGAAAAAAAAGAACTTCAGTACAGAGCTCTGCTTCCCTTGCTTTTGATAGTATTCTTAAGATAACCTTATCCATCTGTTTAGTCTGTTTTTTAATATCATTCATGCTGTTCTACTCCGACTTCTGTATGCAGAGGCTGAAGATTGCTAAGAAGGCACAGGCAGATAGAATTAACTGGTCTGCCTGTTGATGGCCTGTAAAAGCTTAAACTTGACTCATTTTACCAGAAATGCCTTCAAAACAGATTTAACAACAATCAAATTACATATAATTACATAGGCCTGTTTCACTCAGTAATGACACACTCTATAACAAGTGCTTCTCACCCCCAAGCAAGGAATTCTCTGTGCATGTATAGGTATATATGATATAAATATATAAATACAGAGGCTACTCTCTTTTAGTCCCCAACCTCCAAGATTTCACACATCTTCAATCAGCCTACAGAACCTATGCGCAGGTTGACCACAATATGACTTGCTCATACTTCAAATGACACGTTTACAAAATAATATACGTGCCACCTGTAATGACTGCACTGTGAGAGATGCTTTTGGCCTCTTTACACTATTAACCCAATTACTGGTGTTTTGGTACAG
Seq C2 exon
TCAGAAGAAGATAAGAAAAATCTGGCCCGAATGCAGGATCTGATAGATAAGCTACAACTAAAAGTGAAGAGCTACAAACACCAAGCAGAGGAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=NA C2=0.497
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100),PF0003816=Filament=FE(12.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(16.0=88.9),PF0026115=Tropomyosin=PU(13.3=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGAGCTGGAGAATGAACT
R:
GGCTTCCTCTGCTTGGTGTTT
Band lengths:
199-1170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]