HsaINT0107657 @ hg38
Intron Retention
Gene
ENSG00000144821 | MYH15
Description
myosin heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr3:108384687-108389074:-
Coord C1 exon
chr3:108388970-108389074
Coord A exon
chr3:108384783-108388969
Coord C2 exon
chr3:108384687-108384782
Length
4187 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
TACATGCCTATGTATTGCAGGCA
3' ss Score
6.48
Exon sequences
Seq C1 exon
GTTCGTGAACTGGAAGGTGAACTGGAGGGTGAAATCCGTCGCAGTGCAGAGGCCCAGAGGGGAGCCCGCAGACTTGAGCGATGCATCAAAGAGCTGACCTATCAG
Seq A exon
GTACTCCAGGAAACCATTCCCTGTTTGTCTGGCTGGGCACTACCCTGCAGAAAAGTACTCCTTCAAGCCTGAAATGGCCTTCTGGGACTCCTGCCGTTCTCTCTTCATCTTTGTTCTCCTTCAGCAGTAGACACTGACTCACCCTCCCAGAGCTCCTGTGCTATTAGTGGTTTGGATCGGTCTCTTTTCAGAGCTCTCAGGAAACAAAATGTGAGGGGCAAGTTGCAATTAGAAGTGAAAAGCTATTTATACCATCTGGATTTTTTCACACATAGTGTTTGCAGTGCTTTCATAAAGATGCCTTCCTGTGAGTGGCTGAGTGAGAACAATGTGTAAATGAAGTTAATGGCAGAGGCTCGGGGTGGCTACCCAGCTGGCAGGTTACATGGGATGCTGATTCAATTGCAGCGGGGGGCATTTCCACTCCTATTTTCTGGTTGCGCAAACACTCAAGGCCACTGAGGACACTGTTGCTGGTGCCAGGTGGAAACAAAATACTAAAGAGAGACCTCTGAAGCTTTCTGAATCTAACCTGTTGACTAACATTGGTCTCAAGCAATAATTGAAAAGAGGTGGGCAGACTTCTTACAAGTGACTAATGCATTTCTAAAGTAAAAATATCATCATCTACATTTTCACTTTCAACCATTGCTTCCCTTTTCCTTCTAATGCAGTCAACATAGATTCTCTGATGGCAGAGGCACTGTATTTTTCTCCCCTCCAGGGTCTGGCATCCTCCTATCACACAGTAGATGTGTGATTTCCACTGTTGAACACAGATGCTAAAAGTCACTTTCCAGCCCTCTCACACTGCACATGATAGCTTGTTCCAGCTATCTCACACTGGACAGTAAGCTATCTCACACTGCACATGATAGCTTATCCCAGCCCTCTCACATTGCACATGACAGCTTATTCCAATACAAAGGCAAATTTATTTTAGGCACCCATTTTTACAGCTTCTTTGACAATGCCAATGCAAGATCTGCTACTCCTGATTCTGGTTCCTGAGGCTGAGTTGTTAAAGATGTCAAAGTCTTCTTCCCTTGCAGCAGGAAGGATAGATAAGAAAGCACAGCACTTCAGAAGCATCATCTTGGGCTAATTAAGATGAAACAAGCTACTTGCACAGCTCTTTTATTATTAAGCGGTTCCTTTTGTAAGATGAGTTAGTCTGACACTTCTTTAGACCATGCTAGGTATATCAAAGCCACTGAGAAGTGGGCCCATGGTATGTGTGGCTAAGTAGGTAAACACCTTGGGAACTTAAAAGTTTGCTATTCTACTTTGAGGAAGGTGGAGAAGCCACCCATGTTGATGACATGAAATGCTGCTTTAATGTCTGGATTTTCCTTTTTATTTTCCCATTGATTCTTCTTATTGTTTTATTCTGTAAACAACTTCATTATGGAACAAAAAACCAAAGTTATATATTTTTTTGGTTTTCATTGTCCCAAGGAATGCATTCTTGTTCTATCGTGTCTTACCTTTGTTTCTTCATTGTAATAATCCTAGTGTTTCTCATGTACTAGAATGAGGTACATTTATTAATTTCTTCCAAGTGTCTGCAGAATGCTTAGATAGGCCTATTTTCTGCCATCAAATCAGCTAATATCATTAGGCTAGACCCTGTAAGTTTAAAAAGACATTAGAGGACACTCCACATTTCCTGGTACTTGGTTTTGAAGTGTTCAAGGTTAACGCTGAGTCATCTCAATCATCAAAATAACCACCAGGACAAGGAGGCAGGGTGTTTGGTGATAGCCCATTCCTAGGTGCAATTAAAAATGTCATTTTGAAAGGGACACAAATATCATTTTCTTAGGAAAAGTCCTCTGGGAAGATTCTGCTACTGGAAAGGAGTCAAGTGTGGTCCCACTCCATGACAGTTCTATGGCTGGTCCCCATGCTGCATTTATCTTCTCCTTTATATCCCCTTAGCATTTGGAAACTTGTCCTATTTTCTCTCTCCAGCACCTAGAAAAATGTGCTATAAAGCAGAACATAAGATTAGGTACTTGTAACTGCTATAGAAGGTCAAGATAGTTCCTCTGCCCCTCACTCTCCACCCATCTACTCGGTTCTACCATCAACTGCCTCCTACATCCAGGAATCTGTATAGATATTATTTAATCTTTACACATCTAGTCAAGAATGTAGTATCATTTTTAGGGATAAGGAAATACAATTTGGTTAAGTTGCTGTGTTGAGAGGGTTCTCTAGGAACCAAATGCCAGGATAGAGTTAGATGTACAAGAGATCTATTAGAAGTAACATCTATGAAGGATGAAGATGCAAGCAAGCAGGATGGGGCAGAGACGTGAAGGGAGAGGCTGAGGGAGGAAGAGGAGAAGGGAAGAGCGTCAGACTATAGTGCAGCTCTGGGCAAGTCTCCAGCACAAAGATTGCCCAGAAAGGACTCCCATGTTGGGCAGAAATGGCCAGACACTAGTGACTTCACTATGCCCAGCTATTGCCTGGGGGCTGCCTGGGAAGTGTGTGGCCTCAATGCTAATGCTGTGGCGGGTCCCAAAGGCACTGCAGTTGGAGGTTATCAGGTAACTGCACTTCTCACAGCTGAATGTCAAGTTCTTTTCTTGATAGGAAATCTAGGACGTGCATAGTCATGGTCACCAGTTACTCAATGCCCTAGAGCTGAGATGGGAACCTAGGCCTAACATCAATGGCTTTGCCTTCCCATGTGGGAGGGACATCAGTAACATCAGCAACCACTTCTAGCTTTTTTCAGTTTTCTTCTGTGTGGCCTCCTTTATGACCAATTTACTCTCTTCTCAGTAAACTGATTATTAGCAATTAAACCTGTGTTGATTTTATAATTTACTGTAAGCACATAATGCTATGAGTCTTTTGAATTTTATAAACCTGACAAGTTGAGGGATAGGCAGATAAAAACAAAGAAGGGATTTTATTTGAACCAGACTTGTCTCAGTTCCCCAACTAGGTTCTTTCATATATATTCATCCCTGCCTCCTGATGGTTAAAATTAGTAATTATTAATATCTACTTTTACATGGTACTTTAAGGTGGTGGTGTGTGTGGCGGGGGAGCATTCCAGATGATGAGAATAGCTTGGCTAAACCTAAGGAGGACAGAGTGAGCAGGGGAGCTCTGGGGAAACAGGAGAATGTGACCTGGTTGGAGTGGGTTCGTGGTGGTGGGGGGAATGGAAGGTAAGTAGGGGGAACATTAAAGCTGCCAAAAAAGTTCATACTTGATGGAATAGGTCAAATGGAGCCAGAAAACAATTTTAAGCAGTAGTAGATCTTTCTTGATTAAATCAGCTTCTCAACCCTGAGCAAATTGAGATATTTTCTTCCTTTGAAAAGTACAATAGCTCCAATATGGAAATATTCCAGTTAAAGGGGCATGAGGAAAGAGGGGGCAGGCAGACCCCTATCTACCTGCCTGCCTCTAGCCTCCTCTCTCTCTGGAATACCAAAGGCTCTGCAGAGCACAGTTGAGAAACATTATCCCACCAGATTTCCTTTCTTCAGCCCGAGGCTGGATTGTAATTGAGGCAATGAGAATGGGCACACCATGGTCCCCACAGCTTGTAGAATCTTCCTTGCTATCTCCGCATCAGAATTCCAGAAAATTTATCTTTTCTATAGTTCTATTACTCAAAACCAAGAGTCAATTAGAAAGTTCAAAGGAATAGTTGTTTTGATTGGGGAGCAATTGGTTTTCAGTTTTGCATATGTGGCTTTTATAATAATGCACTTCATTCCTGCTAAATAAAGATACAGCTTTTTATTTAGCTATAGCTAAAGCTATTGCTGTTTTCGTCATCTGAATGCACCCCCACTACCACCACCTTAAAGTAAAATATAACAGTAGATAATTCACTACTAATTTTAAGTATACAGATATAGCTTCAGGCAGATATAGCTTGGTTGAGCTGGAAAGACTGAAGACCCAAACTGAACCTAATGGGTTTAACTCCCATTTCAGCAAAGGTTGATGGATCAGGACAAATGACTGTTAGTACTGACAGTTCTATTTATCAATTTCTTGGAACTTGGGTGAGTTAAACCCATTGTTAAAATCACAACTCTGAGATGATGTTTAATAAAGTTCCCTGATCCTTATTTCCCCACATGAGACTACACCAACGTAGACTGCTGGATCCTCTGAATCACCTTCCCATACATGCCTATGTATTGCAG
Seq C2 exon
GCAGAGGAAGACAAGAAGAATCTGAGCAGGATGCAAACTCAGATGGATAAACTTCAGCTAAAAGTGCAAAATTACAAGCAGCAAGTCGAGGTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821:ENST00000273353:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development