GgaINT0120684 @ galGal4
Intron Retention
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12521554-12523268:+
Coord C1 exon
chr1:12521554-12521615
Coord A exon
chr1:12521616-12523172
Coord C2 exon
chr1:12523173-12523268
Length
1557 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
TTGTTGGCTTCTTTTCCTAGATG
3' ss Score
8.8
Exon sequences
Seq C1 exon
AGGAAAGGCTCGTACCTCTCTTTCAAGAGGAAGACTATCAGCAGCAATTACTAATGGGACTG
Seq A exon
GTATGTGCTTTTGTTACAGTGTGCACTAGAGGACGCACAACCTCAACAAGTGTAAAGAGTAAGATAATCAGTTCCAGTGCTGAGTGGAAGCTCACTCAGAGCAGCAATGGGACAAAAGTGATGTTTCCCAAGTTTTGGATTTCATCATCGTGATATCACAATATGATCTTAATAGGTCCTGATATCATAAGGCATAAGGGACTAACAGGAATGGAAAGTTGATCTGTCCGAGTGATTTTCTGCACAACAGCTTTTTTTTTTTAAACTGTTTTTCAGTACCCCCTGAACTTCATCTTAATCTGTCAATTATTCTGGGACTACTTTACATCATTCTAACTTTCTTCACCTTCTACTTCCCTCAAAAATATGACAGATCTTCTTGCTTCTCAACACCTTTTTGCTGTCTCCCTTTCCTTCTGCCTCACTACTAGGACTGCTATGGCTATTCTGAGGTCACTCCTCTTTTGATTTTTTCCCCCCTGATGATCTCCGCCAAGTATCTACCATCTTTATGCTTCTGGGTACTAAATCCTTTCTTAAATAGCTACCTATCCTCCCTCTGTTTAAATATGCATCTTTGCTAATCTCGTGCTGTCAGATCTAAATACAGCTCTCAGCTTGTGTTGGAAGGTCTTCCTATGTGAAGAGTGTATCAACACTGTTCTGTCAGTCCAAATCTAAGGCAAGTTCTCATTCTTTGCATTCTTGCTATCTTTCTCCCAAGTTTTTCCTCTCATCCTCTGAAATTTCTCTATATCTCTTACCTTAAGTAAATTCAGTGAGATCCAAAAAAGCAGATCATTGCTGTCCTTTGTGCTTTCCTACCACCTGTATTGTTTTCTTGACGTGTGGAGATCAATCTACTTGAAAATTCCTCAAGACTGAGATTTTATTTACCTGTTTTTCTCTGAGCTTTGTGGGGGGATGGGGAGAGGGAAGGAAAAAAAAAAAAGTACTTTCTTGTAATTCTCAACAAAGAACTGCCAAAAACCACATAATGAACAAGCTATGTGAGGTCAGAGTATTTCAGAAAGGAGACAAAGGAGAGGGTAGGTAGTGGCATGGACTGTATGGTAGCAAGTAGCTGATTTTAAACACTTTGCAATGAATATTTAACCTAAAGTTGTCATTATTCACTCACGTTCCAAGTCATGTTCCATCACTGCTAGCACAAACTGTACTTGTGCTAGCTTTCTCTATTGTAAAATCCCTCAGATTTATTCATATGTAATAAATACAAGTTAGTGTTCATATTAAAATCTTTACTTCACCTATTTGCTTGGTTTGACCCAAAGAGATTTAAGAAGTGTTAGCTTTTTCTCTTCAACATCACTGACAGTAGCATCCATTTTCCTGAATTTACACCAAGCAACCGTATTGAATATTCAGATCTTCTATTGACTTTGGAACCCCAAACTCTCACACAAGCCAAGCTGGAATTTTGTGACAGGGAGAGGGTTGTGCTGGTTGCTGTTGGTCAGGCCCTGCAACTGGTAGGGCTTTTGCATCTTTTTGAAGAGACCACAAGGACACTGAATTGTTGGCTTCTTTTCCTAG
Seq C2 exon
ATGGTTGCTCAGCTAAAGGATCATCTTATGAGACATCTGCAGTATGTAGGAAAAAAGAAGATTGACCAAATAGTGCTGGATTATGTTGCAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312:ENSGALT00000013530:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF149591=GSAP-16=PU(5.2=18.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]