GgaEX1027595 @ galGal4
Exon Skipping
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12519630-12527351:+
Coord C1 exon
chr1:12519630-12519685
Coord A exon
chr1:12521554-12521615
Coord C2 exon
chr1:12527281-12527351
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGTTGCTCTGTTTATTTCAGAGG
3' ss Score
9.5
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
ACAGAAGAGAGAAGAGCCACAGCATATTTAAGGAATATATTTGAAAACGCCAAAAA
Seq A exon
AGGAAAGGCTCGTACCTCTCTTTCAAGAGGAAGACTATCAGCAGCAATTACTAATGGGACTG
Seq C2 exon
CTGAATCTGGTACATCGAATAATGAAAGAGGTTTGGAAGATACATCAGCTGCATTCCTGCATCTTCTGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312_MULTIEX2-2/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF149591=GSAP-16=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGAGAGAAGAGCCACAGC
R:
TGCAGGAATGCAGCTGATGTA
Band lengths:
116-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]