HsaEX6008603 @ hg19
Exon Skipping
Gene
ENSG00000186088 | PION
Description
pigeon homolog (Drosophila) [Source:HGNC Symbol;Acc:28042]
Coordinates
chr7:76952964-76957954:-
Coord C1 exon
chr7:76957923-76957954
Coord A exon
chr7:76955529-76955590
Coord C2 exon
chr7:76952964-76953059
Length
62 bp
Sequences
Splice sites
3' ss Seq
ATTGCTCTGTTTCATTTCAGGGC
3' ss Score
10.93
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGTGATTTCTAACCTAGAAGCAAGAAATTTGG
Seq A exon
GGCCAAGATTAACACCCCTCCTGCAGGAGGAAGACAGCCACCAGCGGCTGCTCATGGGGCTG
Seq C2 exon
ATGGTGTCTGAGCTAAAAGACCATTTTTTGAGACACCTACAGGGTGTAGAAAAGAAGAAAATTGAACAGATGGTTCTGGACTACATTTCAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088-'36-40,'36-39,39-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF042867=DUF445=FE(8.1=100)
A:
PF042867=DUF445=FE(14.7=100),PF149591=GSAP-16=PU(4.0=19.0)
C2:
PF149591=GSAP-16=PU(5.2=18.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATTTCTAACCTAGAAGCAAGA
R:
CAGTTTTGAAATGTAGTCCAGAACCA
Band lengths:
128-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)