MmuEX6016078 @ mm9
Exon Skipping
Gene
ENSMUSG00000039934 | Pion
Description
pigeon homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:20777035-20783958:+
Coord C1 exon
chr5:20777035-20777066
Coord A exon
chr5:20778800-20778861
Coord C2 exon
chr5:20783863-20783958
Length
62 bp
Sequences
Splice sites
3' ss Seq
CCTTGACTGTTCAATTTCAGAGC
3' ss Score
8.7
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTGATTGCTAGCATGGAAACGAGGACACTGG
Seq A exon
AGCCAAGATTAATACCATTCTTACAAGAGGAAGACCGGCACCAGAGGCTGCTCATGGGCTTG
Seq C2 exon
ATGGTGTCTGAGCTAAGAGACCACCTACTGAGACACCTGCAGGGTGTAGAAAAGAAGAAAATTGAACAGATGGTTCTGGACTACATTTCAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-'24-26,'24-24,25-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF149591=GSAP-16=PU(5.2=18.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATTGCTAGCATGGAAACG
R:
CAGTTTTGAAATGTAGTCCAGAACCA
Band lengths:
128-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: