DreEX6002493 @ danRer10
Exon Skipping
Gene
ENSDARG00000045481 | gsap
Description
gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
Coordinates
chr4:20488085-20490018:-
Coord C1 exon
chr4:20489987-20490018
Coord A exon
chr4:20489217-20489278
Coord C2 exon
chr4:20488085-20488180
Length
62 bp
Sequences
Splice sites
3' ss Seq
CTTACTTTCTGTTTTTCCAGACA
3' ss Score
9.61
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGTTTTATCCATGGTGGACACTTGGCGTTTGG
Seq A exon
ACAGGCGTGTTGTTCCACTCTTTCAGGAGGAAGATCAACAGCAGAGGGTGCTGGTGGGCCTG
Seq C2 exon
ATGGTTGACAAGCTCAGAGAACACTTGAACAGACATTTATCACGACTGGGGAAGAAGAAGATTGATTTGCTGGTGGTGAATTATGCTGCAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045481-'16-19,'16-17,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF149591=GSAP-16=PU(5.2=18.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGGACACTTGGCGTTTG
R:
GCTTTGCAGCATAATTCACCACC
Band lengths:
116-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]