RnoEX6012367 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10436097-10439735:-
Coord C1 exon
chr4:10439704-10439735
Coord A exon
chr4:10437864-10437925
Coord C2 exon
chr4:10436097-10436192
Length
62 bp
Sequences
Splice sites
3' ss Seq
GCTCCTCTGTTCAATTTCAGAGC
3' ss Score
9.78
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGTGATTTCTAACATGGAAATGAAAACATTCG
Seq A exon
AGCCAAGGTTAATACCCCTCTTACAAGAGGAAGACAGGCACCAGAGGCTGCTCATGGGCCTG
Seq C2 exon
ATGGTGTCTGAGCTAAGAGACCATCTACTGAGACACCTGCAGGGTGTAGAAAAGAAGAAAATTGAACAGATGGTTCTGGACTACATTTCAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801-'28-36,'28-35,29-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF149591=GSAP-16=PU(5.2=18.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAACATGGAAATGAAAACATTCG
R:
TGAAATGTAGTCCAGAACCATCT
Band lengths:
116-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]