MmuEX6016078 @ mm10
Exon Skipping
Gene
ENSMUSG00000039934 | Gsap
Description
gamma-secretase activating protein [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:21270556-21278140:+
Coord C1 exon
chr5:21270556-21271248
Coord A exon
chr5:21272982-21273043
Coord C2 exon
chr5:21278045-21278140
Length
62 bp
Sequences
Splice sites
3' ss Seq
CCTTGACTGTTCAATTTCAGAGC
3' ss Score
8.7
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCTATAGAGGACCACTTATGATGGATAATGGTAAAGTCGGCTTTTATAAGTGAGTACTGGCAATGAAAGACATAGTAGTTTGATTTGCTTTAATTGTTGGTGGGCTGGGTTGGTGGAACTTGCTCTTATTTTGAAAGCATATTCTCTGGGTAGATGAGTCATCTCAGAGAACTAAAAGTGCAGGCCTCAGTCCGGCCTCTGTTCTGTTTTTAGCCTTCGTTATTTCCAATAACTGACAGCTGCAATTTTTCTAAATAATTGCTGTTGTTGGCTCTAAAGGGCTTTGAGATTCGTAATTGCTTAATGTTCCTTTCAGTACACTGATTAAAGTTTTTGAGTTTTCAGGTAGCCAGAGAATGGTTTCTGCATGGTTTTTGGGGCTTTAGAGGGGAAACATCTGCATGGTGCTGTGGCTTGAAGTTTTTAAAGTGATGCTTCTGTTGGAGATAACACAGAATTTCTTTGCAGGGTGATTGCTAGCATGGAAACGAGGACACTGG
Seq A exon
AGCCAAGATTAATACCATTCTTACAAGAGGAAGACCGGCACCAGAGGCTGCTCATGGGCTTG
Seq C2 exon
ATGGTGTCTGAGCTAAGAGACCACCTACTGAGACACCTGCAGGGTGTAGAAAAGAAGAAAATTGAACAGATGGTTCTGGACTACATTTCAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-'31-36,'31-33,38-36=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF149591=GSAP-16=PU(5.2=18.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTGTGGCTTGAAGTTT
R:
CCTGCAGGTGTCTCAGTAGGT
Band lengths:
141-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types