GgaEX0012048 @ galGal4
Exon Skipping
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12523173-12527351:+
Coord C1 exon
chr1:12523173-12523268
Coord A exon
chr1:12524833-12524903
Coord C2 exon
chr1:12527281-12527351
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATCTATTTGCTTTCTCCAAGGAA
3' ss Score
6.23
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATGGTTGCTCAGCTAAAGGATCATCTTATGAGACATCTGCAGTATGTAGGAAAAAAGAAGATTGACCAAATAGTGCTGGATTATGTTGCAAACCTG
Seq A exon
GAATCGTAATGATCAGAGAGCCTACTGACACAGGGAAGAAATGGATCAGGATGAACTGTTGAGATGTCTCT
Seq C2 exon
CTGAATCTGGTACATCGAATAATGAAAGAGGTTTGGAAGATACATCAGCTGCATTCCTGCATCTTCTGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312_MULTIEX2-5/5=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PU(5.2=18.8)
A:
NO
C2:
PF149591=GSAP-16=FE(20.0=100)
Main Inclusion Isoform:
ENSGALT00000013530fB1353
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTGCTCAGCTAAAGGATCA
R:
TGCAGGAATGCAGCTGATGTA
Band lengths:
156-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]