GgaEX0012048 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13678660-13682838:+
Coord C1 exon
chr1:13678660-13678755
Coord A exon
chr1:13680320-13680390
Coord C2 exon
chr1:13682768-13682838
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATCTATTTGCTTTCTCCAAGGAA
3' ss Score
6.23
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATGGTTGCTCAGCTAAAGGATCATCTTATGAGACATCTGCAGTATGTAGGAAAAAAGAAGATTGACCAAATAGTGCTGGATTATGTTGCAAACCTG
Seq A exon
GAATCGTAATGATCAGAGAGCCTACTGACACAGGGAAGAAATGGATCAGGATGAACTGTTGAGATGTCTCT
Seq C2 exon
CTGAATCTGGTACATCGAATAATGAAAGAGGTTTGGAAGATACATCAGCTGCATTCCTGCATCTTCTGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'26-33,'26-31,28-33
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF042697=DUF440=PD(16.5=46.9),PF149591=GSAP-16=PU(5.2=18.8)
A:
NO
C2:
PF149591=GSAP-16=FE(20.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTGCTCAGCTAAAGGATCA
R:
TGCAGGAATGCAGCTGATGTA
Band lengths:
156-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]