GgaEX0012047 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13678660-13680390:+
Coord C1 exon
chr1:13678660-13678755
Coord A exon
chr1:13678994-13679058
Coord C2 exon
chr1:13680320-13680390
Length
65 bp
Sequences
Splice sites
3' ss Seq
AAAGAAAATTTCCTTTACAGCTT
3' ss Score
6.19
5' ss Seq
ATGGTCTTT
5' ss Score
-3.83
Exon sequences
Seq C1 exon
ATGGTTGCTCAGCTAAAGGATCATCTTATGAGACATCTGCAGTATGTAGGAAAAAAGAAGATTGACCAAATAGTGCTGGATTATGTTGCAAACCTG
Seq A exon
CTTGTAGAAATATGGTCTGCTCCTGGAAGTGAAAATCTGAACTCATCCTGAAAGCTGGAAGAATG
Seq C2 exon
GAATCGTAATGATCAGAGAGCCTACTGACACAGGGAAGAAATGGATCAGGATGAACTGTTGAGATGTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'26-31,'26-30,27-31
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF042697=DUF440=PD(16.5=46.9),PF149591=GSAP-16=PU(5.2=18.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTTGCTCAGCTAAAGGATCA
R:
AGAGACATCTCAACAGTTCATCCTG
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]