GgaEX0012046 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13677043-13682838:+
Coord C1 exon
chr1:13677043-13677102
Coord A exon
chr1:13678660-13678755
Coord C2 exon
chr1:13682768-13682838
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTTGGCTTCTTTTCCTAGATG
3' ss Score
8.8
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
GAAAGGCTCGTACCTCTCTTTCAAGAGGAAGACTATCAGCAGCAATTACTAATGGGACTG
Seq A exon
ATGGTTGCTCAGCTAAAGGATCATCTTATGAGACATCTGCAGTATGTAGGAAAAAAGAAGATTGACCAAATAGTGCTGGATTATGTTGCAAACCTG
Seq C2 exon
CTGAATCTGGTACATCGAATAATGAAAGAGGTTTGGAAGATACATCAGCTGCATTCCTGCATCTTCTGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'25-33,'25-29,26-33
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF042697=DUF440=FE(20.9=100)
A:
PF042697=DUF440=PD(16.5=46.9),PF149591=GSAP-16=PU(5.2=18.8)
C2:
PF149591=GSAP-16=FE(20.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTCGTACCTCTCTTTCA
R:
TGCAGGAATGCAGCTGATGTA
Band lengths:
119-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]