HsaEX0047665 @ hg19
Exon Skipping
Gene
ENSG00000186088 | PION
Description
pigeon homolog (Drosophila) [Source:HGNC Symbol;Acc:28042]
Coordinates
chr7:76950650-76955590:-
Coord C1 exon
chr7:76955529-76955590
Coord A exon
chr7:76952964-76953059
Coord C2 exon
chr7:76950650-76950720
Length
96 bp
Sequences
Splice sites
3' ss Seq
AATGCATATCCTGTTTTCAGATG
3' ss Score
8.87
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
GGCCAAGATTAACACCCCTCCTGCAGGAGGAAGACAGCCACCAGCGGCTGCTCATGGGGCTG
Seq A exon
ATGGTGTCTGAGCTAAAAGACCATTTTTTGAGACACCTACAGGGTGTAGAAAAGAAGAAAATTGAACAGATGGTTCTGGACTACATTTCAAAACTG
Seq C2 exon
CTGGATCTCATTTGCCACATCGTAGAAACCAATTGGAGGAAACATAATCTTCATTCCTGGGTTCTCCACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF042867=DUF445=FE(14.7=100),PF149591=GSAP-16=PU(4.0=19.0)
A:
PF149591=GSAP-16=PU(5.2=18.8)
C2:
PF042867=DUF445=FE(16.9=100),PF149591=GSAP-16=FE(23.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAGATTAACACCCCTCC
R:
TGGAGAACCCAGGAATGAAGA
Band lengths:
130-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)