BtaEX6026929 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44129498-44136275:+
Coord C1 exon
chr4:44129498-44129559
Coord A exon
chr4:44133303-44133398
Coord C2 exon
chr4:44136205-44136275
Length
96 bp
Sequences
Splice sites
3' ss Seq
TATCTACATTCTGTTTTCAGATG
3' ss Score
10.76
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
AGCCAAGATTAACACCCCTCTTCCAGGAGGAAGACACCCACCAGCAGCTGCTTATCGGGCTG
Seq A exon
ATGGTGTCTGAACTAAGAGAGCATCTTTTGAGACATCTACAGGGTGTAGAAAAGAGAAAAATTGAACAGATGGTTCTGGACTACGTTTCAAAACTG
Seq C2 exon
CTGGATCTCATTTGCCAAATACTGGAAGCCAGTTGGAGGAAACATAATCTTCATCCCTGGGCTCTCCACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430-'31-27,'31-26,32-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF149591=GSAP-16=PU(5.2=18.8)
C2:
PF149591=GSAP-16=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGATTAACACCCCTCTTCC
R:
GGAGAGCCCAGGGATGAAGAT
Band lengths:
128-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]