RnoEX0040230 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10433113-10437925:-
Coord C1 exon
chr4:10437864-10437925
Coord A exon
chr4:10436097-10436192
Coord C2 exon
chr4:10433113-10433183
Length
96 bp
Sequences
Splice sites
3' ss Seq
AGTGCCTGTCCTGTTTTCAGATG
3' ss Score
10.03
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
AGCCAAGGTTAATACCCCTCTTACAAGAGGAAGACAGGCACCAGAGGCTGCTCATGGGCCTG
Seq A exon
ATGGTGTCTGAGCTAAGAGACCATCTACTGAGACACCTGCAGGGTGTAGAAAAGAAGAAAATTGAACAGATGGTTCTGGACTACATTTCAAAACTG
Seq C2 exon
CTGGATCTCGTTTGGTGCTTGCTGGAAACCAGTTGGAGGAAACACAGTGTGCACCCCTGGGTTCTCCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801_MULTIEX1-1/5=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF149591=GSAP-16=PU(5.2=18.8)
C2:
PF149591=GSAP-16=FE(20.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAGGTTAATACCCCTCT
R:
CAGGGGTGCACACTGTGTTTC
Band lengths:
121-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]