GgaINT0120717 @ galGal3
Intron Retention
Gene
ENSGALG00000016867 | ITGBL1
Description
NA
Coordinates
chr1:147581059-147587604:-
Coord C1 exon
chr1:147587458-147587604
Coord A exon
chr1:147581173-147587457
Coord C2 exon
chr1:147581059-147581172
Length
6285 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
AATACTCTTTGTGATTTCAGGTT
3' ss Score
7.34
Exon sequences
Seq C1 exon
GCCATGGCATCTGTTCTTGCGGCCGATGTGTTTGCCAGGAAGGATGGTTTGGAAAGTTGTGCCAGTATTCCAGGAAGTGCAACATGACAGAAGAGGAGAGCAGAAGTCTCTGTGAGTCTGCAGATGGTGTGTTATGCTCAGGAAAGG
Seq A exon
GTAAGGACTGACATCTTATCTACTCCACAGCAGTGCCCTTGCAGAAGAAATGGTCAGGTTCTGGCAGACTAATGTGCATGAAATTGGACTGTTGTTTAGTAACTCTTTCAAAGGCATCTGTTATTAAAAGAATTTACATTCGGCTCCATAATGCACTTACAGCCATTTTGTCAAACACCCACTGCAGCCACAAATGCTTAATGGCGTTAATGTTCTATGCAATTTGTTAATAGCTTATAATTTCCTTCATCTGTTTATCTGATGCTTTGCATTAAGCAGCTGTACGTTATAAACCAAATGTTAGTGCTCCATCTAGTCTGAGGGACAGGATGCTACCTGCAGTAACACAGCAGTGGGGAAGATGGCAAATGTAAATATCCCAGGCAACAATAAGTTAAGGATAGAGCTTAGCAGCAACATTTGGTATGCTCAACCTCCCTCTGCCAGTGCAACAGCAAATGAAAGGTAGATATTGGTACTCCCTATGGCAGAATCCAACACATTCTCTTATTTCCTAACTTTTATTAAGGTGGTTACGTCAGCTTCAGTCCAACTATAAAAAATTGCCAGAGGGAGAAATAAAATTAAAAAAATCTTGATAATTAGCTCAAATAGTTCTCTGAGGTTCTTACCTTGCAGTCTTTCAAGATGGCTAATTGCATTACTGGAAGAAGGGTTTCTTTGCTTCCCCTTAGTGCAAGCTGTCTCTTTTTTTAATATAGCTAAAAGAGAAGAGATGGTAAATGGGTGGTGGGATTAGCTGGAGGCTGGAATGCCCCCACTCAGAGGTGGATGTGCCATCTCCTCTGTCCATGCATTTACTGCATCATCTTACCTGTTAACTGGAGAAAACAGCTAAGAACCTTCTACATCAGGCAGAATTCAAATTGCCCATTCTGGTAACTTTTATGTGTATATGCATATGGAGTTTTTAGCCTAACCTTCTTCAAACTGTTTATGGCTTGTCCAAATTCCTTCCCATTGTACAATTTTAATTTTTTAGGGTTTTTTTTTTAGTTTTTTTTTTTTTCTAATGTTGGCGCAAAGTCATGGAAAAAAAAAAACCTGTGCTGTTTCTCTATTGCTTCTGGAGGATGTAACAATCTATCTTCAAATTAGGGTACCTGAAAGAGAATACTGAGTTTCTGGAGGACTGAAATTACTCTGTTACAATACAGAAGCTAACTTTGCTCCACATAGCCATGGTGTCCCTGTGATTCTTTATACAAATCATGAAGATGAGCAAACGTGCTTAAAATCAATAATATACACAATATTGGATTCTGAATAAGGGTAAAAATTTAAAATGATCTTGAATTTTAAAATATTTGCATCATCTGCTACCTTTTGGGTGGCTGAAAATTACTTTCTCCAGCCTGTGGGTTTTGCTCTATCAAGTAACTTTGAACTCATATATCAGGGTATATGTCAAAGTAAATCTGAGGCTTTGGGAGCAAATCACCTGGCAGGAACTTGCAGAGACATAAAGAACCTTTTCTCCCTCTCTGCTGGCTAAGCTGCCTGGGGAGAGGTTTGGGATCTTGTAACTGGTGTAGGCTGGAGTGTTCTGGAAGTTGCCATGAGTTGTGAAATTGCTTTTAAACTTGGCTTCCTTAATGTAGGATCCAAAGGCCCAGATTTTCTACAGTTTTAGTTCACCGTTGAACATTTATTTTCTACGGGAATTAAAATTCTGACCCTAAATCCATGTTCACACTTGGGCATAAACAAGTGCTTGCTCCAGCAGAGAAATATCTGTGTATGTCAGATAACCTACAGAAGTGCATGGCTGGCGAATATCCAAGGGATAAATCACAGTACTTAGACAAGCACTAATGTTAGGCACAGGTATCTTTTTTCTTAGATATTTCAGACATGGACAGAGGGATTAAGTGCATCCACAGCAAGTTTCCAAATGACACCAAGCTGAGTGGTGCAGTTGATATGCTAGAGGGAAAGGAATGCTATCCAGAAGAACCTGGTCAGGCTTGAAAGATGGGCCCATGCCAACCTTATGAAGTTCAACAAGGCCAAGTGCAAGGTCCTGCACCTGGGCCAGGGTAATCTCAAACACAGATACAGGTTGGATGGAGAATGGGGCTTGAGAGCAGTCCCGAGGAGAAGGATTTGGGGCTGTTGGTTGACGAAAGTCTCAACAAGAGCAGTCAGTGTGTGCCCCTCTACTCTGCTCTCATGAGACCCTAAGCGGAATATTGCATCCAATGCTGGGGCCCCCAGCAGAAGGACAATGAGCTGTTGGAGCAGGTCCAGAGGAGGGCCACGAGGATGATCAGAGGGCTGGAGCCCATCCCCTATGAGGACAGGCTGAGAGAGCTGGGGCTCTTCAGCCTGGAGAAGAAAAGGCTCCGTGCCACCTCATAGCAGCCTTCGAGTACCTGAAGGGGGCCTACAGGAAAGGTGAGGAAGAACTTTTTAGAAGGGGAACAGGACAACGGGAAATGGTTTTAAACTGGAAGAGAGTAGATTTAGACTAGATATTAGGAAGAAAATCTTTACTGTGAGGGTAGTGAGACACTGAAACAGGCTGCCCAGAGAGGTTGTGGATGCCCCCTCACTGGAAGCATTCAAGGCCAGGCTGGATGGGGCTTTGAACAACCTTGTCTAGTGGCAGGTGTCCCTGCCTATAGTGGGGGGGTTGGAGCTAAATGACCTTGGAGGTCCCTTCCAACCCAAACCGTTCTATGATTCCATTATTTTATTCTATGACTTGGGGAATGATCTGTTTCCATTAGAGATGGTGCTTGTGTTTCTTGTGAAAGACGTGAGAGATTTTAGTGACTTAGAGGACTGATCAAATCTACCTAACTGACGGTTATGGGATGCTCCCTCAAGGGAGAAAATACCTCTGCGTAGGATCCTAAACCTTGTACCTTAATGTCCCAGGTGAGGTGAGATAAAGCAGGCAGCACTTTCACATCCACTAGAATGAAGTTGTGAAGAAGACTGCTATCTCTTGCATCTCTGAGTGGGAAGGGGATCATAGGCAAAGAGAGAGAAATTTCTTAAAGCTTTTGTTTATGTGCTCTTATTATTATTACCTTATTAATATTCAGGCAAATCTATTCTTGATATTTAAAAATGTGCCTGGAAACCATGTCTTACTGAGTGCACATACTTTAAAATGGAGCTAGTGTGACTGGCTATGTCCAGAGGCCAAAAATGAGAAATTGTTCCTTCTTTTTCAATGAACTAAGCAATAAGTAACCAAAACTGGTCAAAGAGAGAATGTAGAACCATGCACTAATGAGTTCTTTCAGGGTTTGTTATTTCCATCCTTGCTGGAAAACTAGCCAAGATATGGAAGAGCTATAATGGATGGAGGAAGCTTGAACTTCTGTATGTTGCATTTAGTAGTCTAAGGAGTCCTGGTTTTTAGTGCTGAAAATTTTCAGAAAATTAAACTCGGTAATATAAGCAAAGTTGAGCGTCCACATTCCTTGGCTGCTTTGAAAATCTTGGCTCACTGACTATGCCACCTGTAGCAAAAGCTCTTCCCAAGGAAAACAGCAACACCCACCATGCTGCTGCTTCCCTGGCAGTAAATGCAGGGCTGCAGATGGCTACTGTAGTGGTGCAGGACGCAGGCGAGGTAATGAGCCAAATCCCATCCGAGAGGATCTGGCTGGGATCCCAGGAAACACCCCGCAACTCATTAGACTTGTTTTAATTAAACTGAAGAGGCTCCCAGAGCAGCATGCTCTGTTTAGGGAAAAGACTTGATACATTCATTCTCCCTAACAGATTTTACATTATGGAGCCTGATCTTCCTTGCTTGACGTGGCATTAAATTTGCTGTATCTTCTGTACGTCGTGGACATTCATCAGGAGCAGCATCAGTGACTGCTTATGCAGAACCACTTCAGGTTTCTAACAGTGGTTTTTATTAACTATTTTAATTTCACTAAAATTCTCATACTGTTCAGTATGATTTTCAGCTGTTTGTACCTTCTAACTTTAATAAGCATAGACATCTGGTTTAAATGACACTCAAGTATGTCTTACGATAGCTTCTATAGAGCAACCAGGCTATATGTATGCAATTCTCCATTGCCTATTTGTGTAATGGCAATTTTTATTCTTGTAGGAAATGTCAGTCTTTTTCATGTCAGTGGCACAGTAGGCAGTGCGCATTGAACTCACAGAAAAACTAGATGGTTAACCAAATACTCCCATTCCCAAATGTTCCAATCATTAGTTCTTTCTGGACATGTTTACACGTTCCATATGTTACAAGTTAAAACAGCATTTCTCTAAAATTAGACAGAGATTTTTTTTTCAATAAACCATGTAAATTAATTATATTTTTAAATTAAAAAAAAAAAAAAAAGAAAGATTATCTGCTCTGCAGTTTTAAAGAATTAAGGTTCAGCAATCATAGATCCTTCGGTGACTAAGGAAAAAAAATGAGGAAAATTGGTTGACACCAACAGATCCACATTTAAGAGAAAAAAATACATACTTGATTTTTTACCATGGATTTTATTCAGAAGTCAGTGAAAGGAAATGAAAGATGACCCAGATCCTTTTAATTAATCCATGAACTCTGTTATATACTGGCAGAATCAAACTTCCCTCTCTCAATTTTATTTAATAATACTTTGAAGAAATTGATGCCTTTGTACTATAATTGTGTTGAAAATATTGCAGGAAGGAGCTATTTTCAACAGCATCTAACTCATTCATAAGCATGTACTGTTAAAGGTCAGCAGCTTTGGTAACTTGAAACTCAACCTTCCATAATTATAAGGTGCAAGTGTATTTTTTTGTTGTTTATTTTCAATTTGCTTTGTGCTGCAACTTCCTGTAATTACTATCTATCTCCACAAAGGATTTTACCTCTGCAGTTACTAAACTCCTCATCTTGGCACTTAAGTGTCTGAACTCTATGTAGAAAAGGAGATGCAGGCAGCTGAGGATTGGCTCCATAAAATCCTGATTTCTTCAGCCGAGTGTTGTAATTGCCCAGGTGGAATTTCTAGTTGCAGAATTCCAGTAGAATTCCTTAGTAGCAGAAAAGCCTTCACAGACCCTTCTCAAACTACAGGCTTCCCAATACACATTTGTCTGGTGGCAATTGTCCTTTTTCAGGATTCAAAACCATGAATCTTCCATTGATGACTGGGGTGACTCTGAGTTTTTCCTTAAAGGGAAGTTTCTGGTTCCACCCCACTTCTAGGTGGGTTATAGGTGGTGTAACCCAGATGTCACTGAAGACTCTCTCCTTTGGCTGTGGAGGTGTAATCTGATATGCAGGAGCTCTGGATTCAACCCCCAACATCTCCACTCTTTTCAGTTTGGATATTAGGAAAGAAACTTCTTCACAGAAAGAGTGGTAAGGCAGTGGCACAGGCTGCCCAGGGAAGCAGTCAACTTACCATCCCTGAAGGTGTTCAAGAAACATTTAGATGTGGCACTGAGGGACATGGTTAGTGGGCCTGGTGGGAACGGGTTGACAGTTGGACTAGATGATCTTAGTGGTCTTTTCCAACCTTAAAGATTCTATGATTCTGTAATTCTATAATCCTATAATCCCCAAGGAGGAGGACAGCAGCTTAACCCAGCAGGGTCCTTAGCATACCCTGCAGGAATGAGCAAACTGCTGAACCACAGTAACATGCAAAAACACTTTCTGGCATAGAGGAAGAATTTAGTAATTCCATGAGAAGTGCTTCATCTTAATTTGTGGTGATGGAGATTTTGGGGGTTCAAATTATGTCTATGGGAAACATCCCTAAGGACATTGGATGAGGAGTAACAGTGGGTCAGGGACAATTTGAGCTTTTCCTGTAAGAAAGGAAAAGAAAAGAAAGGAAAGGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAGAAAAGAAAGAAAAGAAAAGGAGAACAGGTTGTGTGAAAAGTGGCCTCTGATTGTAGGTCTGAAACCAAAGAAAGCTTCAAAGTGTGAGTACTGATTAAGTGAAATAGCAGAATCAAAGCATTAGCAGGAACATTTTGCCATTCTCATGGTCACTTTGAATGAATCCTTTTACTCAGAAAGCTTTTAGCTTGATCATTTTCTTTCATACAGTAGTTCCTCAGGCAGTAATTTTGTGCATGTGTCCACGTGTGTGCATGTATGTCTGGAGATGTTATTTTCTAGCCTGAAAATGCCAATGCTCTTGGACTGTAAGTAATACTCTTTGTGATTTCAG
Seq C2 exon
GTTCCTGCCACTGTGGAAAGTGCATCTGTTCACCACAGGAATGGTACATTTCAGGTGATTTTTGTGAATGTGATGACAGAGACTGCGACAAACACGATGGTCTCATTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016867:ENSGALT00000027247:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=40.0),PF079748=EGF_2=PU(35.3=24.0)
A:
NA
C2:
PF079748=EGF_2=PD(61.8=53.8),PF079748=EGF_2=PU(32.3=25.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]